chore(deps): bump auspice from 2.59.1 to 2.66.0 in /packages/nextclade-web

[dependabot]

Bumps auspice from 2.59.1 to 2.66.0.

Release notes

Sourced from auspice's releases.

Auspice 2.66.0

• Fixed a bug that prevented drag-and-drop metadata files from being parsed that was introduced in version 2.64.0 (#2007)
• Added SVG-download support for the measurements panel. (#2005)

Auspice 2.65.0

• "show all branch labels" toggle has been updated to only show labels for visible branches, i.e. branches of selected tips after applying filters (#2004)

Auspice 2.64.0

• Link-outs are explicitly disabled for v1 datasets because the nextstrain.org API does not support the v1 -> v2 conversion. (#2002)
• Added a treeZoom=selected query to load trees at the same zoom level after the "zoom to selected" button has been pressed, where applicable. See the view settings docs for more details. (#1321)
• Downloaded metadata and acknowledgments TSVs will now use extra columns to export associated URLs. (#2003)

internal changes

• The JS bundles created when Auspice (client) is built have been changed in various ways (#1992):
  • Polyfills have been updated and we now only add a subset of polyfills to match our 95% browser target used for JS syntax.
  • Bundles are now available using Brotli compression (in addition to gzip) and the Auspice server is updated to support them.
  • Duplicated code has been reduced in the bundles, and the bundle layout has changed.
  • The map component is separated into a new bundle which should improve load times on datasets which don't use it.
• Loading spinners have been improved in various ways. (#1991)
• Logos available in the bundle are used rather than a fetch to an external domain. (#1996)
• Added unit tests for createStateFromQueryOrJSONs. (#1988)

Auspice 2.63.1

• Fixed a bug where datasets without the (optional!) display_defaults would crash, which included newick files dragged onto auspice.us. (#1986)

Auspice 2.63.0

• Streamtrees are a new visualisation option for displaying phylogenetic trees. They require datasets with labels on internal nodes which we essentially use to partition the nodes of the tree and render each partition as a streamgraph. Such visualisations are useful for conveying relationships between parts of the tree as well as improving performance for very large trees. See the added documentation for more details. (#1902)

• Label URL queries (available when zoomed into a node which has an branch label) are now added in more cases and, when loading the page, we now remove the query if it is not valid. (#1952)

• Datasets can define display_defaults.label to specify the starting zoom level of a tree, similarly to the ?label=... URL query. (#1952)

• The tree's "Reset Layout" button has been renamed "Zoom to Root". (#1952)

• Removed the experimental markers from "Focus on selected" and "Explode Tree By" options. These seem to be working well. (#1954)

• Toggling "Focus on selected" now updates the URL parameter focus=selected. URLs with this parameter can be shared to enable focus on initial page load. (#1955)

• Added Chinese language support. (#1959)

• Added flexibility to the way the "Built with …" sentence can be translated. (#1964)

• Dropped support for Node.JS versions 16 & 18 and their corresponding NPM versions (7 & 8). (#1975)

Auspice 2.62.0

• Added a new color tree by measurements feature. Clicking on a group in the measurements panel will add a new coloring to the tree, where the colors represent an average of the measurement values for the matching test strain within the selected measurements group. For full details, please see #1924.
• Dataset authors can display a warning banner at the top of the page by setting .meta.warning in the main dataset JSON. The warning can be plain text or markdown format. This can be incorporated into Nextstrain workflows using augur export v2 --warning, available as of Augur version 27.2.0. (#1927)
• Bugfix: Clicking on the icons for FULL and GRID layout now changes the layout, just like clicking on the text (#1911)
• The 1Password browser extension, since roughly late November 2024, has interfered with Auspice views, notably when rendering many visual elements which is often the case with a large number of samples and/or genome size. The 1Password developer team is continuing to investigate the issue. In the meantime, we have applied a workaround to mitigate the effects of the issue on Auspice. (#1919)

... (truncated)

Changelog

Sourced from auspice's changelog.

version 2.66.0 - 2025/09/05

• Fixed a bug that prevented drag-and-drop metadata files from being parsed that was introduced in version 2.64.0 (#2007)
• Added SVG-download support for the measurements panel. (#2005)

version 2.65.0 - 2025/09/02

• "show all branch labels" toggle has been updated to only show labels for visible branches, i.e. branches of selected tips after applying filters (#2004)

version 2.64.0 - 2025/08/15

• Link-outs are explicitly disabled for v1 datasets because the nextstrain.org API does not support the v1 -> v2 conversion. (#2002)
• Added a treeZoom=selected query to load trees at the same zoom level after the "zoom to selected" button has been pressed, where applicable. See the view settings docs for more details. (#1321)
• Downloaded metadata and acknowledgments TSVs will now use extra columns to export associated URLs. (#2003)

internal changes

• The JS bundles created when Auspice (client) is built have been changed in various ways (#1992):
  • Polyfills have been updated and we now only add a subset of polyfills to match our 95% browser target used for JS syntax.
  • Bundles are now available using Brotli compression (in addition to gzip) and the Auspice server is updated to support them.
  • Duplicated code has been reduced in the bundles, and the bundle layout has changed.
  • The map component is separated into a new bundle which should improve load times on datasets which don't use it.
• Loading spinners have been improved in various ways. (#1991)
• Logos available in the bundle are used rather than a fetch to an external domain. (#1996)
• Added unit tests for createStateFromQueryOrJSONs. (#1988)

version 2.63.1 - 2025/06/04

• Fixed a bug where datasets without the (optional!) display_defaults would crash, which included newick files dragged onto auspice.us. (#1986)

version 2.63.0 - 2025/06/02

• Streamtrees are a new visualisation option for displaying phylogenetic trees. They require datasets with labels on internal nodes which we essentially use to partition the nodes of the tree and render each partition as a streamgraph. Such visualisations are useful for conveying relationships between parts of the tree as well as improving performance for very large trees. See the added documentation for more details. (#1902)

• Label URL queries (available when zoomed into a node which has an branch label) are now added in more cases and, when loading the page, we now remove the query if it is not valid. (#1952)

• Datasets can define display_defaults.label to specify the starting zoom level of a tree, similarly to the ?label=... URL query. (#1952)

• The tree's "Reset Layout" button has been renamed "Zoom to Root". (#1952)

• Removed the experimental markers from "Focus on selected" and "Explode Tree By" options. These seem to be working well. (#1954)

• Toggling "Focus on selected" now updates the URL parameter focus=selected. URLs with this parameter can be shared to enable focus on initial page load. (#1955)

• Added Chinese language support. (#1959)

• Added flexibility to the way the "Built with …" sentence can be translated. (#1964)

• Dropped support for Node.JS versions 16 & 18 and their corresponding NPM versions (7 & 8). (#1975)

version 2.62.0 - 2025/01/21

... (truncated)

Commits

• e78a880 version bump to 2.66.0 for release
• 8761324 Merge pull request #2005 from nextstrain/measurements-svg-download
• b358c4c changelog
• e9f6087 [SVG download] Include measurements panel
• 8419e52 [SVG download] Fix map panel layout when "grid" display
• 1ad2216 Merge pull request #2007 from nextstrain/fix-drag-and-drop
• cc5814b Update changelog
• 0709b0b Fix drag-and-drop metadata
• 5f58011 version bump to 2.65.0 for release
• 75f0d98 Merge pull request #2004 from nextstrain/selected-branch-labels
• Additional commits viewable in compare view

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[dependabot]

Superseded by #1704.