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Schema validation for pathogen.json does not reject unknown fields or catch typos

bugSomething isn't workingSomething isn't working

Status: Open.

#1711 In nextstrain/nextclade;

· nneune opened on Dec 8, 2025

Getting "null pointer passed to rust" on Nextclade Web

needs triageMark for review and label assignmentMark for review and label assignment

s:nextclade_web

t:bugType: bug, error, something isn't workingType: bug, error, something isn't working

Status: Open.

#1701 In nextstrain/nextclade;

· corneliusroemer opened on Oct 23, 2025

QC label for recombinant sequences

good first issueGood for newcomersGood for newcomers

help wantedExtra attention is neededExtra attention is needed

needs triageMark for review and label assignmentMark for review and label assignment

t:featType: request of a new feature, functionality, enchancementType: request of a new feature, functionality, enchancement

Status: Open.

#1699 In nextstrain/nextclade;

· nneune opened on Oct 17, 2025

Divergent information about coverage and cds coverage for nextstrain/flu/h3n2/pb2

t:askType: question, request of information 1Type: question, request of information 1

Status: Open.

#1694 In nextstrain/nextclade;

· dezordi opened on Oct 10, 2025

npm package for nextclade in WASM

t:featType: request of a new feature, functionality, enchancementType: request of a new feature, functionality, enchancement

Status: Open.

#1685 In nextstrain/nextclade;

· theosanderson opened on Sep 29, 2025

Multi dataset for CLI

t:askType: question, request of information 1Type: question, request of information 1

Status: Open.

#1681 In nextstrain/nextclade;

· MarieLataretu opened on Sep 16, 2025

Incorrect placement of ORF9b amino acid substitution adjacent to a deletion (lineage XFC.1)

t:bugType: bug, error, something isn't workingType: bug, error, something isn't working

Status: Open.

#1670 In nextstrain/nextclade;

· LucvZon opened on Aug 12, 2025

potential bug: band boundary hit when trailing in-dels are present at the end of a simple stripe alignment

good first issueGood for newcomersGood for newcomers

help wantedExtra attention is neededExtra attention is needed

needs triageMark for review and label assignmentMark for review and label assignment

t:bugType: bug, error, something isn't workingType: bug, error, something isn't working

Status: Open.

#1654 In nextstrain/nextclade;

· mmolari opened on Jun 26, 2025

"Error: Internal Error: Dataset not found: 'http://localhost:3000'."

needs triageMark for review and label assignmentMark for review and label assignment

t:bugType: bug, error, something isn't workingType: bug, error, something isn't working

Status: Open.

#1653 In nextstrain/nextclade;

· corneliusroemer opened on Jun 20, 2025

"Range Error: Invalid string length" in JS when launching web worker

s:nextclade_web

t:bugType: bug, error, something isn't workingType: bug, error, something isn't working

Status: Open.

#1651 In nextstrain/nextclade;

· corneliusroemer opened on Jun 15, 2025

bzip2 has a native Rust implementation

good first issueGood for newcomersGood for newcomers

help wantedExtra attention is neededExtra attention is needed

t:featType: request of a new feature, functionality, enchancementType: request of a new feature, functionality, enchancement

Status: Open.

#1650 In nextstrain/nextclade;

· fanninpm opened on Jun 13, 2025

Suggestion crashes with OOM from around ~3k HA seqs (6MB)

package: nextclade_web

t:bugType: bug, error, something isn't workingType: bug, error, something isn't working

Status: Open.

#1647 In nextstrain/nextclade;

· corneliusroemer opened on Jun 7, 2025