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ingest/nextstrain-automation: revisit Slack notification rules

Status: Open.

#346 In nextstrain/mpox;

· joverlee521 opened on Nov 14, 2025

ingest: curate PPX geolocation fields

Status: Open.

#345 In nextstrain/mpox;

· joverlee521 opened on Nov 13, 2025

ingest/nextstrain-automation: Uploaded files are double compressed

Status: Open.

#343 In nextstrain/mpox;

· joverlee521 opened on Nov 13, 2025

dead links

bugSomething isn't workingSomething isn't working

Status: Open.

#332 In nextstrain/mpox;

· kapsakcj opened on Aug 15, 2025

ingest: remove .gz/.xz files and <code>date_submitted</code> column by TBD

Status: Open.

#320 In nextstrain/mpox;

· joverlee521 opened on Jun 23, 2025

Support for <code>nextstrain run</code>

Status: Open.

#314 In nextstrain/mpox;

· joverlee521 opened on Jun 11, 2025

[phylogenetic] B.1 tree fails due to "export: has duplicate nodes or "treetime: nodes with name None"

bugSomething isn't workingSomething isn't working

Status: Open.

#310 In nextstrain/mpox;

· corneliusroemer opened on Apr 23, 2025

Relax Nextclade dataset coverage thresholds

Status: Open.

#308 In nextstrain/mpox;

· corneliusroemer opened on Mar 19, 2025

assign-colors scripts are largely identical

Status: Open.

#286 In nextstrain/mpox;

· jameshadfield opened on Nov 3, 2024

Reached maximum recursion depth when building phylogenetic trees

bugSomething isn't workingSomething isn't working

Status: Open.

#282 In nextstrain/mpox;

· mengfeip opened on Oct 20, 2024

Update phylogenetic GH Action workflows

Status: Open.

#259 In nextstrain/mpox;

· joverlee521 opened on Jun 18, 2024

Potentially include year-only sequences

enhancementNew feature or requestNew feature or request

Status: Open.

#231 In nextstrain/mpox;

· corneliusroemer opened on Jan 21, 2024