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Pull requests: loculus-project/loculus
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feat(prepro): use pydantic to validate and parse the prepro config
preview
Triggers a deployment to argocd
#5769
opened Dec 19, 2025 by
anna-parker
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2 tasks done
feat(deposition): use zstd download and orjsonl for released entries
#5768
opened Dec 19, 2025 by
google-labs-jules
bot
•
Draft
feat(backend, deposition): add a deposition status to the backend and use to filter get-released-data prior to streaming
preview
Triggers a deployment to argocd
update_db_schema
#5767
opened Dec 19, 2025 by
anna-parker
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3 tasks done
feat(backend, website): alert users during group creation when groupname is in use
#5766
opened Dec 19, 2025 by
maverbiest
•
Draft
3 tasks
feat(silo-import): use orjsonl to increase speed of parsing ndjson an…
#5764
opened Dec 19, 2025 by
anna-parker
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2 of 3 tasks
feat(website): add diff view for comparing sequence versions
preview
Triggers a deployment to argocd
#5760
opened Dec 18, 2025 by
corneliusroemer
•
Draft
5 of 8 tasks
chore(deps): bump the minor group in /backend with 2 updates
dependencies
Pull requests that update a dependency file
java
Pull requests that update Java code
#5751
opened Dec 17, 2025 by
dependabot
bot
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chore(deps): bump react-dom and @types/react-dom in /keycloak/keycloakify
dependencies
Pull requests that update a dependency file
javascript
Pull requests that update Javascript code
#5747
opened Dec 17, 2025 by
dependabot
bot
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chore(deps): bump the minorandpatch group in /keycloak/keycloakify with 8 updates
dependencies
Pull requests that update a dependency file
javascript
Pull requests that update Javascript code
#5746
opened Dec 17, 2025 by
dependabot
bot
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chore(deps): bump the minorandpatch group in /ingest with 8 updates
conda
Pull requests that update conda code
dependencies
Pull requests that update a dependency file
#5740
opened Dec 17, 2025 by
dependabot
bot
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Feature/spring boot 4 experimental
preview
Triggers a deployment to argocd
#5736
opened Dec 17, 2025 by
corneliusroemer
•
Draft
3 tasks
chore(silo-import): upgrade to SILO 0.8, adapt to the new input data format in the import job
#5733
opened Dec 17, 2025 by
anna-parker
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3 tasks done
wip
preview
Triggers a deployment to argocd
#5728
opened Dec 16, 2025 by
theosanderson
•
Draft
3 tasks
chore(deps): bump zod from 3.25.76 to 4.2.0 in /website
dependencies
Pull requests that update a dependency file
javascript
Pull requests that update Javascript code
#5721
opened Dec 15, 2025 by
dependabot
bot
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chore(deps-dev): bump the minor group in /website with 5 updates
dependencies
Pull requests that update a dependency file
javascript
Pull requests that update Javascript code
#5717
opened Dec 15, 2025 by
dependabot
bot
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feat(kubernetes): correctly type submission and release dates
#5710
opened Dec 15, 2025 by
chaoran-chen
•
Draft
3 tasks
demo: flip config to segment-then-reference
preview
Triggers a deployment to argocd
#5701
opened Dec 15, 2025 by
theosanderson
•
Draft
3 tasks
fix config and stop uploading embl flatfiles
#5685
opened Dec 11, 2025 by
anna-parker
•
Draft
3 tasks
chore(kubernetes, silo-import): upgrade to SILO 0.8, adapt to the new input data format in the import job
preview
Triggers a deployment to argocd
#5683
opened Dec 11, 2025 by
fengelniederhammer
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3 tasks done
feat(deployment): validate nextclade preprocessing configFile schema
#5678
opened Dec 10, 2025 by
theosanderson
•
Draft
fix(prepro) - Update EVs minimizers adding clades and RVs (WIP)
#5662
opened Dec 9, 2025 by
alejandra-gonzalezsanchez
•
Draft
3 tasks
refactor(website): edit page - remove side effect from rows getter
#5639
opened Dec 5, 2025 by
anna-parker
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3 tasks
chore!(website): migrate to use Astro content collection
#5635
opened Dec 4, 2025 by
corneliusroemer
•
Draft
3 tasks
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