Calculating

The treeman package comes with a few functions for calculating common tree statistics. These methods are all prefixed with calc* and can often be parallelized. Example calc methods include calculating the distances between trees, calculating the distance matrix between nodes and tips, calculating evolutionary distinctness.

# two random trees
t1 <- randTree(100)
t2 <- randTree(100)
# calculate robinson-foulds distance
rf_dst <- calcDstRF(t1, t2, nrmlsd=FALSE)
# calculate branch length distance
bld_dst <- calcDstBLD(t1, t2, nrmlsd=FALSE)

For a full list of calc-methods see this page

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