Supplemental files: "Harnessing Genetic Variation in Leaf Angle to Increase Productivity of Sorghum bicolor"
Sandra K. Truong, Ryan F. McCormick, William L. Rooney, and John E. Mullet
Genetics, Early online August 31, 2015 (doi 10.1534/genetics.115.178608)
Folder Descriptions:
v_sorghum : contains .lpy files, light files, and custom scripts to calculate light extinction coefficient, k, from virtual sorghum plots. It relies on the opensource software OpenAlea v1.0.
exp_fields: contains photosynthetically active radiation (PAR) data taken from RIL 63 and RIL 73 in the fields, and scripts used to parse and calculate light extinction coefficient, k.
dw3: contains a .pdf describing genotyping of dwarf-3 locus and .txt of sequence amplified.
h2_and_qtl: contains heritabilities for QTL, penalties used for QTL model selection and QTL model statistics for all phenotypes, and genotypes and phenotypes in R/qtl format.