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@katosh katosh commented Sep 18, 2025

Potential scverse application of kompot.

katosh and others added 30 commits September 18, 2025 14:26
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Mikkel Niklas Rasmussen <77323950+mikkelnrasmussen@users.noreply.github.com>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
add ehrapy and pertpy

Signed-off-by: Lukas Heumos <lukas.heumos@posteo.net>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.14.3 → v0.14.4](astral-sh/ruff-pre-commit@v0.14.3...v0.14.4)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
add anndata & scanpy to syn

Signed-off-by: Lukas Heumos <lukas.heumos@posteo.net>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
* Update schema

Rename authors -> contact and add field for logos

* Fix corrupted github/pypi identifiers

* Add schema version

* Update gh actions

* Add github token

* Apply suggestions from code review

Co-authored-by: Lukas Heumos <lukas.heumos@posteo.net>

* Remove website from package registry

* Add grst to authors; format pyproject.toml

* fix schema

* Batch users a bit

* remove orgs from contacts

* Do not fail fast

Instead, collect all errors until the end and print all of them

* Fix logging

---------

Co-authored-by: Lukas Heumos <lukas.heumos@posteo.net>
Co-authored-by: Philipp A. <flying-sheep@web.de>
* Add anndataR YAML

* Add anndataR logo

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* update pre-commit config

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Gregor Sturm <gregor.sturm@boehringer-ingelheim.com>
* Add zellkonverter YAML

* Add zellkonverter logo

* Fix logo field

* Update pre-commit-config

---------

Co-authored-by: Gregor Sturm <gregor.sturm@boehringer-ingelheim.com>
Co-authored-by: Gregor Sturm <mail@gregor-sturm.de>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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coderabbitai bot commented Nov 26, 2025

Important

Review skipped

Draft detected.

Please check the settings in the CodeRabbit UI or the .coderabbit.yaml file in this repository. To trigger a single review, invoke the @coderabbitai review command.

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✨ Finishing touches
🧪 Generate unit tests (beta)
  • Create PR with unit tests
  • Post copyable unit tests in a comment
  • Commit unit tests in branch kompot

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9 participants