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Update grn.R #24

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Update grn.R #24

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5 changes: 3 additions & 2 deletions R/grn.R
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Original file line number Diff line number Diff line change
Expand Up @@ -261,8 +261,9 @@ fit_grn_models.SeuratPlus <- function(
peak_data <- peak_data[, peaks_use, drop=FALSE]

log_message('Preparing model input', verbose=verbose)
tfs_use <- colnames(motif2tf)
motif2tf <- motif2tf[, tfs_use, drop=FALSE]
tfs_use <- names(motif2tf)
tfs_use <- na.omit(tfs_use)
motif2tf <- motif2tf[tfs_use, drop=FALSE]

log_message('Fitting models for ', length(features), ' target genes' , verbose=verbose)
# Loop through features and fit models/run CV for each
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