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17 changes: 16 additions & 1 deletion docs/looper/how-to/rerun.md
Original file line number Diff line number Diff line change
Expand Up @@ -34,8 +34,23 @@ currentPipestatManager.set_status(record_identifier="sample2", status_identifier
```
More info on setting status can be found [here](../developer-tutorial/developer-pipestat.md#setting-and-checking-status).

Now that your pipeline is setting statuses, you can check the status of all samples using:
```shell
looper check
```
This command will show you a list of samples and their associated status,e.g:

```
'count_lines' pipeline status summary
┏━━━━━━━━━━━━━━━┳━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┓
┃ Status ┃ Jobs count/total jobs ┃
┡━━━━━━━━━━━━━━━╇━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┩
│ completed │ 1/3 │
│ failed │ 2/3 │
└───────────────┴─────────────────────────────┘
```

Now that your pipeline is setting statuses, you can resubmit failed jobs with:
You can resubmit all failed jobs with:
```shell
looper rerun
```
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2 changes: 1 addition & 1 deletion mkdocs.yml
Original file line number Diff line number Diff line change
Expand Up @@ -153,7 +153,7 @@ nav:
- Running project-level pipelines: looper/how-to/project-level-pipelines.md
- Link similar results: looper/how-to/link-objects.md
- Report objects: looper/how-to/report-objects.md
- Rerun samples: looper/how-to/rerun.md
- Check status and rerun samples: looper/how-to/rerun.md
- Pipeline Developer Docs:
- Developer tutorial:
- Writing a pipeline interface: looper/developer-tutorial/writing-a-pipeline-interface.md
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