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@pathogen-genomics

UCSC Pathogen Genomics

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  1. usher-public-workflow usher-public-workflow Public

    A Dockstore WDL Workflow that uses UShER to place your consensus.fasta sequences on the SARS-CoV-2 phylogeny

    WDL 2 1

  2. introduction-website introduction-website Public

    Forked from jmcbroome/introduction-website

    Code for a webpage displaying introductions and resulting clusters of coronavirus across the USA. Customized for CA Dept. of Public Health.

    JavaScript 1 2

  3. taxonium taxonium Public

    Forked from theosanderson/taxonium

    Explore very large trees in the browser

    JavaScript

  4. integrate-covidnet integrate-covidnet Public

    This repository contains a single WDL Workflow for syncing with Dockstore and then running on the Terra Cloud Computing Platform

    WDL

  5. cdph-rsv cdph-rsv Public

    Scripts and files for processing RSV fastq files

    Shell

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