Open Problems in Single-Cell Analysis

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30 packages

base_python
Published Jun 13, 2023 by Open Problems in Single-Cell Analysis in openproblems-bio/base_images

89.3k
base_r
Published Jun 13, 2023 by Open Problems in Single-Cell Analysis in openproblems-bio/base_images

24.8k
utils/extract_uns_metadata
Published Oct 31, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

19.8k
h5ad/extract_uns_metadata
Published Sep 2, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/core

8.36k
data_processors/precompute_clustering_run
Published Jan 10, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

5.32k
metrics/clustering_overlap
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

3.3k
metrics/isolated_label_f1
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

3.29k
metrics/regression_2
Published Aug 1, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

3.26k
data_processors/transform
Published Sep 22, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

3.23k
metrics/graph_connectivity
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

3.03k
metrics/asw_label
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

3k
metrics/lisi
Published Sep 22, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

3k
metrics/isolated_label_asw
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

2.98k
metrics/asw_batch
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

2.96k
metrics/pcr
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

2.95k
metrics/kbet
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

2.93k
metrics/cell_cycle_conservation
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

2.88k
metrics/regression_1
Published Jul 19, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

2.54k
metrics/ws_distance
Published Jan 22, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

2.33k
metrics/similarity
Published Sep 23, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

1.74k
data_processors/precompute_clustering_merge
Published Jan 10, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

1.59k
metrics/f1
Published Sep 2, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_label_projection

1.48k
metrics/accuracy
Published Sep 2, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_label_projection

1.44k
metrics/sem
Published Sep 17, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

1.34k
schema/verify_data_structure
Published Sep 2, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/core

1.33k
metrics/hvg_overlap
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

1.26k
metrics/regression
Published Oct 28, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

1.23k
validation/check_dataset_with_schema
Published Oct 31, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

1.21k
metrics/emd
Published Feb 13, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_cyto_batch_integration

1.13k
metrics/average_batch_r2
Published Mar 12, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_cyto_batch_integration

1.12k