Repositories list

• ACDC-Microscopy

  Public
  Collection of scripts used for Preprocessing and Analysis of padFISH and Immunofluorescence (IF) data sets in the study "Two different chromatin modules regulate proinflammatory gene expression" from Seufert et al. (BioRxiv) (https://doi.org/10.1101/2024.08.03.606159)

  Jupyter Notebook

  •0•0•0•0•Updated Dec 15, 2025Dec 15, 2025

• padFISH

  Public
  Collection of scripts used for Preprocessing of and analysis of padFISH data sets

  Jupyter Notebook

  •0•1•0•0•Updated Dec 3, 2025Dec 3, 2025

• MBEN

  Public
  Jupyter Notebook

  •

  GNU Affero General Public License v3.0

  •0•3•0•0•Updated May 8, 2025May 8, 2025

• RWireX

  Public
  R

  •

  MIT License

  •1•9•0•0•Updated Aug 9, 2024Aug 9, 2024

• MLL-EDC4

  Public
  0•0•0•0•Updated Oct 23, 2023Oct 23, 2023

• TurboATAC

  Public
  HTML

  •

  MIT License

  •0•0•0•0•Updated Sep 13, 2023Sep 13, 2023

• RWire-IFN

  Public
  Scripts for co-regulation analysis of scATAC-seq data

  R

  •0•0•0•0•Updated Jan 31, 2023Jan 31, 2023

• NSSQ

  Public
  Spot segmentation and quantification on fluorescence microscopy images

  0•0•0•0•Updated Mar 15, 2022Mar 15, 2022

• NSQFRAP

  Public
  Quantification of FRAP experiments of binding site clusters

  0•0•0•0•Updated Mar 15, 2022Mar 15, 2022

• RRMM

  Public
  Data analysis scripts for scRNA-seq analysis of relapsed and refractory multiple myeloma

  HTML

  •2•10•0•0•Updated Sep 27, 2021Sep 27, 2021

• ALT-FISH

  Public
  Script collection for the automated analysis of ALT-FISH image data.

  R

  •0•0•0•0•Updated Jun 7, 2021Jun 7, 2021

• Chromocenters

  Public
  R

  •0•0•0•0•Updated May 12, 2021May 12, 2021

• Optodroplets

  Public
  R

  •0•0•0•0•Updated May 5, 2021May 5, 2021