Skip to content

Conversation

@jkobject
Copy link
Contributor

@jkobject jkobject commented Oct 13, 2025

Describe your changes

I thought I was only updating the default parameters of scPRINT's pipeline (but actually 2 other changes are contained in this PR)

  • a debug that makes sure that the input gene version and scprint gene versions match (in script.py)
  • an update of scgpt's Docker image that I was asked to do

However, this needs to be merged before wednesday (where a rerun of the pipeline will be triggered)

Checklist before requesting a review

  • I have performed a self-review of my code

  • Check the correct box. Does this PR contain:

    • Breaking changes
    • New functionality
    • Major changes
    • Minor changes
    • Bug fixes
  • CI Tests succeed and look good!

@jkobject jkobject changed the title changing the default params changing the default params (and actually updating a non merged PR?) Oct 13, 2025
@rcannood rcannood changed the title changing the default params (and actually updating a non merged PR?) Update scPRINT parameter settings Oct 15, 2025
Copy link
Member

@rcannood rcannood left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

LGTM!

@rcannood rcannood merged commit 68eb2ec into openproblems-bio:main Oct 15, 2025
2 checks passed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

3 participants