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Update LISI docs #56

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Update LISI docs #56

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8 changes: 6 additions & 2 deletions src/metrics/lisi/config.vsh.yaml
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Expand Up @@ -14,7 +14,8 @@ info:
variable.
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@lazappi lazappi Apr 14, 2025

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Maybe this paragraph could be updated while you are at it? At the moment it's the same for cLISI and iLISI.


The original LISI score ranges from 0 to the number of categories, with the latter
indicating good cell mixing. This is rescaled to a score between 0 and 1.
indicating good cell mixing. This is rescaled to a score between 0 and 1, where 0
represents bad batch mixing and 1 represents good batch mixing.
references:
doi: 10.1038/s41592-021-01336-8
links:
Expand All @@ -33,7 +34,10 @@ info:
distance computation on single-cell kNN graphs. The metric assesses whether clusters
of cells in a single-cell RNA-seq dataset are well-mixed across a categorical cell type variable.

The original LISI score ranges from 0 to the number of categories, with the latter indicating good cell mixing. This is rescaled to a score between 0 and 1.
The original LISI score ranges from 0 to the number of categories, with the latter
indicating good cell mixing. This is inverted and rescaled to a score between 0 and 1,
where 0 represents bad cell type separation and 1 represents good cell type separation.

references:
doi: 10.1038/s41592-021-01336-8
links:
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