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1. local_correlation_analysis local_correlation_analysis Public

   Scripts for analyzing the local correlation between two microscopy image channels to assess co-localization at the level of individual subcellular compartments.

   Python 1

2. pathMS pathMS Public

   A computational pipeline to identify pathogen-specific (or "pathology-specific" for non-infectious disease applications) MS1 peaks in proteomics/peptidomics datasets.

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3. AutoMS AutoMS Public

   Forked from hcji/AutoMS

   Deep Denoising Autoencoder-assisted Continuous Scoring of Peak Quality in High-Resolution LC−MS Data

   Jupyter Notebook

4. SureQuant_MHC SureQuant_MHC Public

   Scripts to help build SureQuant mass spec methods for analysis of MHC peptides and analyze data generated by these methods.

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5. deeprtalign deeprtalign Public

   Forked from PHOENIXcenter/deeprtalign

   a deep learning-based retention time alignment tool for large cohort LC-MS data analysis

   Python