Search results

feat2-0, no concatenation of fastqs

bugSomething isn't workingSomething isn't working

Status: Open.

#176 In nf-core/clipseq;

· MartiPedna opened on Dec 2, 2025

iGenomes GRCh37 misread (?) during pureclip peakcalling

bugSomething isn't workingSomething isn't working

Status: Open.

#173 In nf-core/clipseq;

· irikas opened on Nov 13, 2025

No compatible iGenomes genome for iCount peakcaller

bugSomething isn't workingSomething isn't working

Status: Open.

#172 In nf-core/clipseq;

· irikas opened on Nov 13, 2025

Create new test data

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#171 In nf-core/clipseq;

· Chromojones opened on Nov 10, 2025

we need minus bigwig with positive signal

bugSomething isn't workingSomething isn't working

Status: Open.

#170 In nf-core/clipseq;

· CharlotteAnne opened on Nov 10, 2025

iCount summaries error

bugSomething isn't workingSomething isn't working

Status: Open.

#168 In nf-core/clipseq;

· iraiosub opened on Jun 12, 2025

Crosslinks and peaks are not produced for all samples in the samplesheet

bugSomething isn't workingSomething isn't working

Status: Open.

Bug

#167 In nf-core/clipseq;

· kkuret opened on May 18, 2025

Add promoter, enhancer annotations to regional summaries from genehancer for organisms where this is available

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#164 In nf-core/clipseq;

· CharlotteAnne opened on Apr 4, 2025

document the annotation options and outputs

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

Task

#163 In nf-core/clipseq;

· iraiosub opened on Mar 28, 2025

Remove the separate filer_gtf module that filters for Ensembl_canonical flag

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#157 In nf-core/clipseq;

· kkuret opened on Mar 26, 2025

rename longest_transcript-related params and outputs more meaningfully

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

Task

#156 In nf-core/clipseq;

· iraiosub opened on Mar 26, 2025

When transcript filtering is applied to GTF, the selected transcripts should also be used for transcriptome analyses

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#141 In nf-core/clipseq;

· kkuret opened on Mar 25, 2025