Minor update

.github/workflows/cd.yml

@@ -0,0 +1,66 @@
+name: "Continuous Deployment"
+
+on: 
+  push:
+    tags:
+      - "*"
+
+jobs:
+
+  #############################################################################
+  # Create and online deployment of the documentation #########################
+  docs: #######################################################################
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v4
+
+    - name: Install Dependencies (pip)
+      shell: bash
+      run: |
+        python -m pip install --upgrade pip
+        python -m pip install .[docs]
+
+    - name: Build Documentation
+      run: |
+        make html
+      working-directory: docs/
+
+    - name: Deploy
+      uses: peaceiris/actions-gh-pages@v3
+      with:
+        github_token: ${{ secrets.GITHUB_TOKEN }}
+        publish_dir: ./docs/build/html
+        allow_empty_commit: true
+
+  #############################################################################
+  ## Publish the distribution to PyPI #########################################
+  distribution_pypi: ##########################################################
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v4
+
+    - name: Install build
+      run: >-
+        python -m pip install build --user
+
+    - name: Build a binary wheel and a source tarball
+      run: >-
+        python -m build --sdist --wheel --outdir dist/ .
+
+    - name: Publish distribution to PyPI
+      if: startsWith(github.ref, 'refs/tags')
+      uses: pypa/gh-action-pypi-publish@release/v1
+      with:
+        password: ${{ secrets.PYPI_API_TOKEN }}
+
+  #############################################################################
+  ## Create a public "Release" on the Github page #############################
+  release_github: #############################################################
+    runs-on: ubuntu-latest
+    permissions:
+      contents: write
+    steps:
+    - uses: actions/checkout@v4
+    - uses: ncipollo/release-action@v1
+      with:
+        token: ${{ secrets.GITHUB_TOKEN }}

.github/workflows/create-tag.yml

@@ -0,0 +1,44 @@
+name: Create Git Tag
+
+on:
+  workflow_dispatch:
+    inputs:
+      tag_name:
+        description: "Tag name (eg. v1.3.0)"
+        required: true
+        type: string
+
+permissions:
+  contents: write
+
+jobs:
+  create_tag:
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+          persist-credentials: false
+
+      - name: Configure git with PAT
+        run: |
+          git config user.name "github-actions[bot]"
+          git config user.email "github-actions[bot]@users.noreply.github.com"
+          git remote set-url origin "https://x-access-token:${{ secrets.PAT_EZYRB_PUSH }}@github.com/${{ github.repository }}.git"
+
+      - name: Check if the tag is already existing
+        run: |
+          TAG="${{ inputs.tag_name }}"
+          git fetch --tags
+          if git rev-parse -q --verify "refs/tags/$TAG" >/dev/null; then
+            echo "❌ Tag $TAG already exists"
+            exit 1
+          fi
+
+      - name: Create and push the tag
+        run: |
+          TAG="${{ inputs.tag_name }}"
+          git tag "$TAG"
+          git push origin "$TAG"

.github/workflows/testing_pr.yml

@@ -13,14 +13,14 @@ jobs:
       fail-fast: false
       matrix:
         os: [windows-latest, macos-latest, ubuntu-latest]
-        python-version: [3.8, 3.9, 3.10, 3.11]
+        python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"]
 
     steps:
-    - uses: actions/checkout@v2
+    - uses: actions/checkout@v4
 
 
     - name: Set up Python
-      uses: actions/setup-python@v2
+      uses: actions/setup-python@v4
       with:
         python-version: ${{ matrix.python-version }}
 

ezyrb/plugin/shift.py

@@ -71,7 +71,7 @@ def fit_preprocessing(self, rom):
         rom.database = db
 
     def predict_postprocessing(self, rom):
-        for param, snap in rom.predict_full_database._pairs:
+        for param, snap in rom.predicted_full_database._pairs:
             snap.space = (
                 rom.database._pairs[self.reference_index][1].space +
                 self.__shift_function(param.values)

ezyrb/reducedordermodel.py

@@ -666,9 +666,12 @@ def predict(self, parameters=None):
 
         # convert parameters from Database to numpy array (if database)
         if isinstance(parameters, Database):
-            self.predict_full_database = parameters
+            self.predict_reduced_database = parameters
+
         elif isinstance(parameters, (list, np.ndarray, tuple)):
-            self.predict_full_database = Database(parameters, [None]*len(parameters))
+            print(parameters)
+            parameters = np.atleast_2d(parameters)
+            self.predict_reduced_database = Database(parameters, [None]*len(parameters))
         elif parameters is None:
             if self.predict_full_database is None:
                 raise RuntimeError
@@ -677,13 +680,17 @@ def predict(self, parameters=None):
 
         self.multi_predict_database = {}
         for k, rom_ in self.roms.items():
-            self.multi_predict_database[k] = rom_.predict(self.predict_full_database)
+            self.multi_predict_database[k] = rom_.predict(self.predict_reduced_database)
+        print(self.multi_predict_database)
         self._execute_plugins('predict_postprocessing')
 
         if isinstance(parameters, Database):
-            return self.predict_full_database 
+            return self.multi_predict_database
         else:
-            return self.predict_full_database.snapshots_matrix 
+            return {
+                k:db.snapshots_matrix 
+                for k, db in self.multi_predict_database.items()
+            }
 
 
     def save(self, fname, save_db=True, save_reduction=True, save_approx=True):

pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "ezyrb"
-version = "1.3.1"
+version = "1.3.2"
 description = "Easy Reduced Basis"
 readme = "README.md"
 authors = [
@@ -36,14 +36,11 @@ dev = [
     "black",
     "pylint"
 ]
-tutorial = [
-    "jupyter",
-    "notebook"
-]
 
 [project.urls]
 Homepage = "https://github.com/mathLab/EZyRB"
 Repository = "https://github.com/mathLab/EZyRB"
+Documentation = "http://mathlab.github.io/EZyRB/"
 
 [build-system]
 requires = ["setuptools>=45", "wheel"]

tests/test_k_neighbors_regressor.py

@@ -58,16 +58,12 @@ def test_with_db_predict(self):
 
     def test_wrong1(self):
         # wrong number of params
-        with warnings.catch_warnings():
-            warnings.filterwarnings("ignore", category=np.VisibleDeprecationWarning) 
-            with self.assertRaises(Exception):
-                reg = KNeighborsRegressor()
-                reg.fit([[1, 2], [6,], [8, 9]], [[1, 0], [20, 5], [8, 6]])
+        with self.assertRaises(Exception):
+            reg = KNeighborsRegressor()
+            reg.fit([[1, 2], [6,], [8, 9]], [[1, 0], [20, 5], [8, 6]])
 
     def test_wrong2(self):
         # wrong number of values
-        with warnings.catch_warnings():
-            warnings.filterwarnings("ignore", category=np.VisibleDeprecationWarning) 
-            with self.assertRaises(Exception):
-                reg = KNeighborsRegressor()
-                reg.fit([[1, 2], [6,], [8, 9]], [[20, 5], [8, 6]])
+        with self.assertRaises(Exception):
+            reg = KNeighborsRegressor()
+            reg.fit([[1, 2], [6,], [8, 9]], [[20, 5], [8, 6]])