Pinned Loading

1. BatzoglouLabSU/SIMLR BatzoglouLabSU/SIMLR Public

   Implementations in both Matlab and R of the SIMLR method. The manuscript of the method is available at: https://www.nature.com/articles/nmeth.4207

   MATLAB 113 62

2. BIMIB-DISCo/TRONCO BIMIB-DISCo/TRONCO Public

   Repository of the TRanslational ONCOlogy library, which includes various algorithms (such as CAPRESE and CAPRI) and the Pipeline for Cancer Inference (PICNIC).

   R 30 8

3. danro9685/SparseSignatures danro9685/SparseSignatures Public

   Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: https://journals.plos.org/ploscompbiol/article?id=10.1371/journ…

   R 11 4

4. caravagnalab/revolver caravagnalab/revolver Public

   Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data

   R 66 26

5. CroceRossaItaliana/jorvik CroceRossaItaliana/jorvik Public

   'Jorvik' is the codename for the second and latest version of the Gaia Project, used by Italian Red Cross. ISSUES: https://jira.gaia.cri.it/browse/JO

   Python 45 24

6. BIMIB-DISCo/LACE BIMIB-DISCo/LACE Public

   LACE 2.0 is a new release of the LACE R Bioconductor package, which provides an interactive user interface to perform clonal evolution analyses for single-cell sequencing data, including longitudin…

   R 15 4