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Multiple forward and or reverse primers, how to handle them?

enhancementNew feature or requestNew feature or request

Status: Open.

#188 In lentendu/DeltaMP;

· lentendu opened on Mar 17, 2025

Accept gz compress database fasta files

documentation

enhancementNew feature or requestNew feature or request

Status: Open.

#183 In lentendu/DeltaMP;

· lentendu opened on Jun 1, 2023

·  

Reduce footprint

Issue with ASV and swarm clustering not accepting N's

bugSomething isn't workingSomething isn't working

enhancementNew feature or requestNew feature or request

Status: Open.

#179 In lentendu/DeltaMP;

· lentendu opened on Apr 3, 2023

Feature: similarity based clustering for pair-end sequences which cannot be assembled

configuration file

documentation

enhancementNew feature or requestNew feature or request

steps

to do

Status: Open.

#175 In lentendu/DeltaMP;

· lentendu opened on Feb 3, 2023

Problem with restart from step when cut_db in the steps

deltamp main

invalidThis doesn't seem rightThis doesn't seem right

Status: Open.

#173 In lentendu/DeltaMP;

· lentendu opened on Nov 27, 2022

Replace OBITools and MOTHUR by seqkit and vsearch where possible

documentation

enhancementNew feature or requestNew feature or request

steps

Status: Open.

#164 In lentendu/DeltaMP;

· lentendu opened on Oct 19, 2022

·  

Improve versatility

Remove all conversion of number of mismatch to proportion

enhancementNew feature or requestNew feature or request

Status: Open.

#148 In lentendu/DeltaMP;

· lentendu opened on Nov 12, 2021

Handle configuration file with barcodes when already demultiplexed

deltamp main

enhancementNew feature or requestNew feature or request

Status: Open.

#137 In lentendu/DeltaMP;

· lentendu opened on Apr 13, 2021

Use cut reference database as prior knowledge to dada2 error correction algorithm

enhancementNew feature or requestNew feature or request

Status: Open.

#119 In lentendu/DeltaMP;

· lentendu opened on Jul 13, 2020

Checkpointing failed when starting at a step with array hold

bugSomething isn't workingSomething isn't working

deltamp main

Status: Open.

#117 In lentendu/DeltaMP;

· lentendu opened on Jul 7, 2020

Allow single Illumina library

enhancementNew feature or requestNew feature or request

steps

Status: Open.

#107 In lentendu/DeltaMP;

· lentendu opened on Nov 15, 2019

Allow linked primers for 454, and disable length optimization

configuration file

documentation

enhancementNew feature or requestNew feature or request

steps

to do

Status: Open.

#106 In lentendu/DeltaMP;

· lentendu opened on Nov 12, 2019

·  

Improve versatility