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invalid escape characters in Python 3.13+ but not previous versions.

Status: Open.

#86 In jorvis/biocode;

· jorvis opened on Oct 13, 2025

product info not printout in tbl

bug

Status: Open.

#74 In jorvis/biocode;

· shuhailaMSR opened on Aug 26, 2021

Formatting Issue?

bug

Status: Open.

#72 In jorvis/biocode;

· remiketchum opened on May 11, 2021

Incorrect parent features from convert_tRNAScanSE_to_gff3.pl

Status: Open.

#70 In jorvis/biocode;

· 14zac2 opened on Dec 28, 2020

Conda based install

enhancement

Status: Open.

#65 In jorvis/biocode;

· nhartwic opened on Sep 27, 2019

[convert_genbank_to_gff3.py] key_error: locus_tag

bug

Status: Open.

#60 In jorvis/biocode;

· Piplopp opened on May 13, 2019

Exclude mRNA features in bacterial TBL exports

Status: Open.

#56 In jorvis/biocode;

· jorvis opened on Jun 25, 2018

convert_gff3_to_ncbi_tbl

Status: Open.

#54 In jorvis/biocode;

· bernt-matthias opened on Feb 13, 2018

Augustus conversion failing

Status: Open.

#51 In jorvis/biocode;

· jorvis opened on Jan 10, 2018

Script needed for assembly evaluation

enhancement

Status: Open.

#36 In jorvis/biocode;

· jorvis opened on Jan 29, 2016

biocodeutils.py add error output mRNA ID

Status: Open.

#30 In jorvis/biocode;

· ktretina opened on Nov 20, 2014

correct_gff_feature_order.pl misplacing ##FASTA

Status: Open.

#29 In jorvis/biocode;

· ktretina opened on Nov 20, 2014