Update all non-major dependencies

[renovate]

This PR contains the following updates:

Package	Type	Update	Change	Age	Adoption	Passing	Confidence
anyhow	build-dependencies	patch	1.0.86 -> 1.0.89
anyhow	dependencies	patch	1.0.86 -> 1.0.89
clap	dependencies	patch	4.5.16 -> 4.5.20
libc	dependencies	patch	0.2.158 -> 0.2.159
pytest (changelog)	dev	patch	8.3.2 -> 8.3.3
python		minor	3.12 -> 3.13
regex	dependencies	minor	1.10.6 -> 1.11.0
serde (source)	dependencies	patch	1.0.204 -> 1.0.210
serde_json	dependencies	patch	1.0.122 -> 1.0.128
serde_with	dependencies	minor	3.9.0 -> 3.11.0
wasm-encoder (source)	dependencies	minor	0.216.0 -> 0.219.0
wasmparser (source)	dependencies	minor	0.216.0 -> 0.219.0

---

Release Notes

dtolnay/anyhow (anyhow)

v1.0.89

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• Make anyhow::Error's UnwindSafe and RefUnwindSafe impl consistently available between versions of Rust newer and older than 1.72 (#​386)

v1.0.88

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• Documentation improvements

v1.0.87

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• Support more APIs, including Error::new and Error::chain, in no-std mode on Rust 1.81+ (#​383)

clap-rs/clap (clap)

v4.5.20

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Features

• (unstable) Add CommandExt

v4.5.19

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Internal

• Update dependencies

v4.5.18

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Features

• (builder) Expose Arg::get_display_order and Command::get_display_order

v4.5.17

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Fixes

• (help) Style required argument groups
• (derive) Improve error messages when unsupported fields are used

rust-lang/libc (libc)

v0.2.159

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Added

• Android: add more AT_* constants in #​3779
• Apple: add missing NOTE_* constants in #​3883
• Hermit: add missing error numbers in #​3858
• Hurd: add __timeval for 64-bit support in #​3786
• Linux: add epoll_pwait2 in #​3868
• Linux: add mq_notify in #​3849
• Linux: add missing NFT_CT_* constants in #​3844
• Linux: add the fchmodat2 syscall in #​3588
• Linux: add the mseal syscall in #​3798
• OpenBSD: add sendmmsg and recvmmsg in #​3831
• Unix: add IN6ADDR_ANY_INIT and IN6ADDR_LOOPBACK_INIT in #​3693
• VxWorks: add S_ISVTX in #​3768
• VxWorks: add vxCpuLib and taskLib functions #​3861
• WASIp2: add definitions for std::net support in #​3892

Fixed

• Correctly handle version checks when clippy-driver is used #​3893

Changed

• EspIdf: change signal constants to c_int in #​3895
• HorizonOS: update network definitions in #​3863
• Linux: combine ioctl APIs in #​3722
• WASI: enable CI testing in #​3869
• WASIp2: enable CI testing in #​3870

pytest-dev/pytest (pytest)

v8.3.3

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pytest 8.3.3 (2024-09-09)

Bug fixes

• #​12446: Avoid calling @property (and other instance descriptors) during fixture discovery -- by asottile{.interpreted-text role="user"}

• #​12659: Fixed the issue of not displaying assertion failure differences when using the parameter --import-mode=importlib in pytest>=8.1.

• #​12667: Fixed a regression where type change in [ExceptionInfo.errisinstance]{.title-ref} caused [mypy]{.title-ref} to fail.

• #​12744: Fixed typing compatibility with Python 3.9 or less -- replaced [typing.Self]{.title-ref} with [typing_extensions.Self]{.title-ref} -- by Avasam{.interpreted-text role="user"}

• #​12745: Fixed an issue with backslashes being incorrectly converted in nodeid paths on Windows, ensuring consistent path handling across environments.

• #​6682: Fixed bug where the verbosity levels where not being respected when printing the "msg" part of failed assertion (as in assert condition, msg).

• #​9422: Fix bug where disabling the terminal plugin via -p no:terminal would cause crashes related to missing the verbose option.

  -- by GTowers1{.interpreted-text role="user"}

Improved documentation

• #​12663: Clarify that the [pytest_deselected]{.title-ref} hook should be called from [pytest_collection_modifyitems]{.title-ref} hook implementations when items are deselected.
• #​12678: Remove erroneous quotes from [tmp_path_retention_policy]{.title-ref} example in docs.

Miscellaneous internal changes

• #​12769: Fix typos discovered by codespell and add codespell to pre-commit hooks.

rust-lang/regex (regex)

v1.11.0

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===================
This is a new minor release of regex that brings in an update to the
Unicode Character Database. Specifically, this updates the Unicode data
used by regex internally to the version 16 release.

New features:

• FEATURE #​1228:
  Add new regex::SetMatches::matched_all method.
• FEATURE #​1229:
  Update to Unicode Character Database (UCD) version 16.

serde-rs/serde (serde)

v1.0.210

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• Support serializing and deserializing IpAddr and SocketAddr in no-std mode on Rust 1.77+ (#​2816, thanks @​MathiasKoch)
• Make serde::ser::StdError and serde::de::StdError equivalent to core::error::Error on Rust 1.81+ (#​2818)

v1.0.209

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• Fix deserialization of empty structs and empty tuples inside of untagged enums (#​2805, thanks @​Mingun)

v1.0.208

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• Support serializing and deserializing unit structs in a flatten field (#​2802, thanks @​jonhoo)

v1.0.207

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• Improve interactions between flatten attribute and skip_serializing/skip_deserializing (#​2795, thanks @​Mingun)

v1.0.206

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• Improve support for flatten attribute inside of enums (#​2567, thanks @​Mingun)

v1.0.205

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• Use serialize_entry instead of serialize_key + serialize_value when serialize flattened newtype enum variants (#​2785, thanks @​Mingun)
• Avoid triggering a collection_is_never_read lint in the deserialization of enums containing flattened fields (#​2791)

serde-rs/json (serde_json)

v1.0.128

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• Support serializing maps containing 128-bit integer keys to serde_json::Value (#​1188, thanks @​Mrreadiness)

v1.0.127

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• Add more removal methods to OccupiedEntry (#​1179, thanks @​GREsau)

v1.0.126

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• Improve string parsing on targets that use 32-bit pointers but also have fast 64-bit integer arithmetic, such as aarch64-unknown-linux-gnu_ilp32 and x86_64-unknown-linux-gnux32 (#​1182, thanks @​CryZe)

v1.0.125

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• Speed up \uXXXX parsing and improve handling of unpaired surrogates when deserializing to bytes (#​1172, #​1175, thanks @​purplesyringa)

v1.0.124

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• Fix a bug in processing string escapes in big-endian architectures (#​1173, thanks @​purplesyringa)

v1.0.123

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• Optimize string parsing by applying SIMD-within-a-register: 30.3% improvement on twitter.json from 613 MB/s to 799 MB/s (#​1161, thanks @​purplesyringa)

jonasbb/serde_with (serde_with)

v3.11.0: serde_with v3.11.0

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Added

• Add support for hashbrown v0.15 (#​787/#​790)

  This extends the existing support for hashbrown v0.14 to the newly released version.

v3.10.0: serde_with v3.10.0

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Added

• Add newline separator by @​jayvdb (#​777)

  The UnixLineSeparator and DosLineSeparator can be used together with StringWithSeparator.

Fixed

• Proper handling of cfg_attr in the serde_as macro by @​sivizius (#​782)

  This allows to parse more valid forms of the cfg_attr macro, including multiple values and attribute that do not follow the key = value schema.

---

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[renovate]

⚠️ Artifact update problem

Renovate failed to update artifacts related to this branch. You probably do not want to merge this PR as-is.

♻ Renovate will retry this branch, including artifacts, only when one of the following happens:

• any of the package files in this branch needs updating, or
• the branch becomes conflicted, or
• you click the rebase/retry checkbox if found above, or
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The artifact failure details are included below:

File name: executor/Cargo.lock

Command failed: cargo update --config net.git-fetch-with-cli=true --manifest-path executor/Cargo.toml --workspace
error: failed to parse manifest at `/tmp/renovate/repos/github/yeagerai/genvm/executor/Cargo.toml`

Caused by:
  the cargo feature `profile-rustflags` requires a nightly version of Cargo, but this is the `stable` channel
  See https://doc.rust-lang.org/book/appendix-07-nightly-rust.html for more information about Rust release channels.
  See https://doc.rust-lang.org/cargo/reference/unstable.html#profile-rustflags-option for more information about using this feature.

File name: executor/modules/common/Cargo.lock

Command failed: cargo update --config net.git-fetch-with-cli=true --manifest-path executor/modules/common/Cargo.toml --workspace
error: failed to parse manifest at `/tmp/renovate/repos/github/yeagerai/genvm/executor/Cargo.toml`

Caused by:
  the cargo feature `profile-rustflags` requires a nightly version of Cargo, but this is the `stable` channel
  See https://doc.rust-lang.org/book/appendix-07-nightly-rust.html for more information about Rust release channels.
  See https://doc.rust-lang.org/cargo/reference/unstable.html#profile-rustflags-option for more information about using this feature.

File name: executor/modules/default-impl/llm-funcs/Cargo.lock

Command failed: cargo update --config net.git-fetch-with-cli=true --manifest-path executor/modules/default-impl/llm-funcs/Cargo.toml --workspace
error: failed to parse manifest at `/tmp/renovate/repos/github/yeagerai/genvm/executor/modules/default-impl/llm-funcs/Cargo.toml`

Caused by:
  the cargo feature `profile-rustflags` requires a nightly version of Cargo, but this is the `stable` channel
  See https://doc.rust-lang.org/book/appendix-07-nightly-rust.html for more information about Rust release channels.
  See https://doc.rust-lang.org/cargo/reference/unstable.html#profile-rustflags-option for more information about using this feature.

File name: executor/modules/default-impl/web-funcs/Cargo.lock

Command failed: cargo update --config net.git-fetch-with-cli=true --manifest-path executor/modules/default-impl/web-funcs/Cargo.toml --workspace
error: failed to parse manifest at `/tmp/renovate/repos/github/yeagerai/genvm/executor/modules/default-impl/web-funcs/Cargo.toml`

Caused by:
  the cargo feature `profile-rustflags` requires a nightly version of Cargo, but this is the `stable` channel
  See https://doc.rust-lang.org/book/appendix-07-nightly-rust.html for more information about Rust release channels.
  See https://doc.rust-lang.org/cargo/reference/unstable.html#profile-rustflags-option for more information about using this feature.

File name: sdk-rust/Cargo.lock

Command failed: cargo update --config net.git-fetch-with-cli=true --manifest-path sdk-rust/Cargo.toml --workspace
error: failed to parse manifest at `/tmp/renovate/repos/github/yeagerai/genvm/sdk-rust/Cargo.toml`

Caused by:
  the cargo feature `trim-paths` requires a nightly version of Cargo, but this is the `stable` channel
  See https://doc.rust-lang.org/book/appendix-07-nightly-rust.html for more information about Rust release channels.
  See https://doc.rust-lang.org/cargo/reference/unstable.html#profile-trim-paths-option for more information about using this feature.