GFAGraphs - A Python GFA library

This Python library aims to be an abstraction layer for GFA file format.

Warning

gfagraphs is not actively maintained as I moved to Rust for my main research work. However, as the library is used in some projects, the library remains available as is.

Package gfagraphs

The package is organized in 4 modules:

• gfagraphs.abstractions contains abstractions over GFA formats
• gfagraphs.gfaparser contains an abstract class for parsing and saving GFA file format
• gfagraphs.graph contains the main Graph class that represents a GFA graph in memory, and edit functions
• gfagraphs.networkx conains an abstract class for visualization and modelization of GFA in a NetworkX object

Note

Want to contribute? Feel free to open a PR on an issue about a missing, buggy or incomplete feature!