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deeptools / deepTools Public

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Pytest updates#1395

Merged

WardDeb merged 20 commits into4.0.0deeptools/deepTools:4.0.0from

pytest_updatesdeeptools/deepTools:pytest_updatesCopy head branch name to clipboard

Apr 23, 2025

Conversation Commits20 (20)Checks Files changed

Merged

Pytest updates#1395
WardDeb merged 20 commits into4.0.0from
pytest_updates

Commits

Commits on Apr 4, 2025

ctrl-c in computematrix too
WardDeb
committed

Commits on Apr 16, 2025

bugfixes and alignment to tests
WardDeb
committed
drop exactscaling, ignoreDuplicates from arguments, workaround for old python code
WardDeb
committed
deal with different pseudocount / scalefactor options on CLI
WardDeb
committed
drop ignoreduplicates from parser
WardDeb
committed
reflect changes in changelog
WardDeb
committed
update pytests bamCoverage, bamCompare
WardDeb
committed
drop ignoreDups from plotter functions
WardDeb
committed
test updates
WardDeb
committed
properly parse bed6 (score & strand)
WardDeb
committed

Commits on Apr 17, 2025

pytest under rust venv with maturin install
WardDeb
committed
drop venv from test action
WardDeb
committed
regroup test actions into build / test / wheel names
WardDeb
committed
typo venv
WardDeb
committed
round of all floats to 2 decimal places
WardDeb
committed
update test to accomodate rounded floats
WardDeb
committed

Commits on Apr 22, 2025

update computeMatrix expected test files
WardDeb
committed
computematrix testing with rust version
WardDeb
committed
weed out last computematrix bugs in negative stranded bed/gtf
WardDeb
committed
reflect matrix changes in changelog
WardDeb
committed

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