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Qdrant API is outdated, that leads to an errors

bugSomething isn't workingSomething isn't working

Status: Open.

#18 In databio/geniml;

· khoroshevskyi opened on Dec 2, 2025

Standardize Atacformer and ScEmbed API

enhancementNew feature or requestNew feature or request

Status: Open.

#17 In databio/geniml;

· nleroy917 opened on Nov 4, 2025

<code>geniml</code> wont install with python 3.13

Status: Open.

#16 In databio/geniml;

· nleroy917 opened on Sep 29, 2025

Deprecate <code>.gtok</code> files for now

enhancementNew feature or requestNew feature or request

Status: Open.

#14 In databio/geniml;

· nleroy917 opened on Sep 5, 2025

Create a <code>TokenizedCells</code> class

enhancementNew feature or requestNew feature or request

good first issueGood for newcomersGood for newcomers

Status: Open.

#13 In databio/geniml;

· nleroy917 opened on Sep 5, 2025

Atacformer needs unit tests

atacformer

Status: Open.

#11 In databio/geniml;

· nleroy917 opened on Aug 21, 2025

Make the <code>context_size</code> configurable when running <code>encode_tokenized_cells</code>

atacformer

enhancementNew feature or requestNew feature or request

Status: Open.

#10 In databio/geniml;

· nleroy917 opened on Aug 19, 2025

Atacformer installation issues megathread

atacformer

Status: Open.

#9 In databio/geniml;

· nleroy917 opened on Aug 19, 2025

tokenization of scEmbed

Status: Open.

#7 In databio/geniml;

· Keegan17123 opened on Nov 13, 2024

error in building model for likelihood (LH)

Status: Open.

#6 In databio/geniml;

· LimKaiShi opened on Oct 10, 2024

Can <code>bbclient</code> module be its own package?

Status: Open.

#4 In databio/geniml;

· jkanche opened on Jul 15, 2024