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Changes:

  • API
    • Added umap calculation
  • UI
    • Added BED-analyzer (qc), which is backed by gtars-wasm package
    • Home page improvements
    • multiple ui improvements
    • Added visualization of the UMAP, and interactiv

TODO:

  • Version of pepdbagent updated in __version__.py file
  • Changelog updated

khoroshevskyi and others added 30 commits October 16, 2025 14:23
Bumps [vite](https://github.com/vitejs/vite/tree/HEAD/packages/vite) from 6.3.6 to 6.4.1.
- [Release notes](https://github.com/vitejs/vite/releases)
- [Changelog](https://github.com/vitejs/vite/blob/main/packages/vite/CHANGELOG.md)
- [Commits](https://github.com/vitejs/vite/commits/create-vite@6.4.1/packages/vite)

---
updated-dependencies:
- dependency-name: vite
  dependency-version: 6.4.1
  dependency-type: direct:development
...

Signed-off-by: dependabot[bot] <support@github.com>
Bumps [vega-interpreter](https://github.com/vega/vega) from 2.0.0 to 2.2.1.
- [Release notes](https://github.com/vega/vega/releases)
- [Commits](vega/vega@v2.0.0...v2.2.1)

---
updated-dependencies:
- dependency-name: vega-interpreter
  dependency-version: 2.2.1
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
Bumps [vega-expression](https://github.com/vega/vega), [vega](https://github.com/vega/vega) and [vega-lite](https://github.com/vega/vega-lite). These dependencies needed to be updated together.

Updates `vega-expression` from 6.0.0 to 6.1.0
- [Release notes](https://github.com/vega/vega/releases)
- [Commits](vega/vega@v6.0.0...v6.1.0)

Updates `vega` from 6.1.2 to 6.2.0
- [Release notes](https://github.com/vega/vega/releases)
- [Commits](vega/vega@v6.1.2...v6.2.0)

Updates `vega-lite` from 6.2.0 to 6.4.1
- [Release notes](https://github.com/vega/vega-lite/releases)
- [Changelog](https://github.com/vega/vega-lite/blob/main/CHANGELOG.md)
- [Commits](vega/vega-lite@v6.2.0...v6.4.1)

---
updated-dependencies:
- dependency-name: vega-expression
  dependency-version: 6.1.0
  dependency-type: indirect
- dependency-name: vega
  dependency-version: 6.2.0
  dependency-type: indirect
- dependency-name: vega-lite
  dependency-version: 6.4.1
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
@khoroshevskyi khoroshevskyi merged commit 07e7816 into master Dec 1, 2025
2 checks passed
@khoroshevskyi khoroshevskyi deleted the embeddings branch December 1, 2025 23:23
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3 participants