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added links to new refgenie #219

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Merged
khoroshevskyi merged 1 commit into from
Aug 28, 2025
Merged

added links to new refgenie #219

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1 change: 1 addition & 0 deletions ui/bedbase-types.d.ts
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Original file line number Diff line number Diff line change
Expand Up @@ -1543,6 +1543,7 @@ export interface components {
/** Provided Genome */
provided_genome: string;
/** Compared Genome */
genome_digest: string;
compared_genome: string;
/**
* Xs
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103 changes: 56 additions & 47 deletions ui/src/components/bed-splash-components/refgenome-modal.tsx
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Original file line number Diff line number Diff line change
@@ -1,5 +1,6 @@
import { Modal } from 'react-bootstrap';
import { components } from '../../../bedbase-types';
import { Link } from 'react-router-dom';

type BedGenomeStats = components['schemas']['RefGenValidReturnModel'];

Expand Down Expand Up @@ -56,85 +57,93 @@ export const RefGenomeModal = (props: Props) => {

{genomeStats?.compared_genome?.sort((a, b) => a.tier_ranking - b.tier_ranking)
.map(genome => (
<div
className="card mb-2 shadow-sm genome-card"
style={{ backgroundColor: (genome.tier_ranking == 1 ? '#C8EFB3A0' : (genome.tier_ranking == 2 ? '#FFF7BAA0' : (genome.tier_ranking == 3 ? '#F9D39DA0' : '#FCB6B6A0'))) }}
<Link
to={`https://api.refgenie.org/v4/page/genome/${genome.genome_digest}`}
key={genome.compared_genome}
className="text-decoration-none"
target="_blank"
rel="noopener noreferrer"
>
<div className="card-body">
<div
className="card mb-2 shadow-sm genome-card"
style={{ backgroundColor: (genome.tier_ranking == 1 ? '#C8EFB3A0' : (genome.tier_ranking == 2 ? '#FFF7BAA0' : (genome.tier_ranking == 3 ? '#F9D39DA0' : '#FCB6B6A0'))) }}
key={genome.compared_genome}
>
<div className="card-body">

<div className="row">
<div className="col-12">
<div className="d-flex align-items-center gap-2">
<p className="mb-1 fw-semibold" style={{ width: '33%' }}>{genome.compared_genome}</p>
<div className="row">
<div className="col-12">
<div className="d-flex align-items-center gap-2">
<p className="mb-1 fw-semibold" style={{ width: '33%' }}>{genome.compared_genome}</p>

<div className="rounded-1 mx-2 bg-white position-relative shadow-sm" style={{ width: '14%' }}>
{genome.xs ?
<>
<div className="rounded-1 mx-2 bg-white position-relative shadow-sm" style={{ width: '14%' }}>
{genome.xs ?
<>
<span
className={`text-xs position-absolute start-50 top-50 translate-middle ${(genome.xs || 0) * 100 > 30 ? 'text-white' : 'text-dark'}`}>
{((genome.xs || 0) * 100).toFixed(2) + '%'}
</span>
<div className="rounded-1 bg-primary"
style={{ height: '16px', width: `${(genome.xs || 0) * 100}%` }} />
</>
:
<>
<div className="rounded-1 bg-primary"
style={{ height: '16px', width: `${(genome.xs || 0) * 100}%` }} />
</>
:
<>
<span className="text-xs position-absolute start-50 top-50 translate-middle text-dark">
N/A
</span>
<div className="rounded-1 bg-primary" style={{ height: '16px', width: '0' }} />
</>
}
</div>
<div className="rounded-1 bg-primary" style={{ height: '16px', width: '0' }} />
</>
}
</div>

<div className="rounded-1 mx-2 bg-white position-relative shadow-sm" style={{ width: '14%' }}>
{genome.oobr ?
<>
<div className="rounded-1 mx-2 bg-white position-relative shadow-sm" style={{ width: '14%' }}>
{genome.oobr ?
<>
<span
className={`text-xs position-absolute start-50 top-50 translate-middle ${(genome.oobr || 0) * 100 > 30 ? 'text-white' : 'text-dark'}`}>
{((genome.oobr || 0) * 100).toFixed(2) + '%'}
</span>
<div className="rounded-1 bg-primary"
style={{ height: '16px', width: `${(genome.oobr || 0) * 100}%` }} />
</>
:
<>
<div className="rounded-1 bg-primary"
style={{ height: '16px', width: `${(genome.oobr || 0) * 100}%` }} />
</>
:
<>
<span className="text-xs position-absolute start-50 top-50 translate-middle text-dark">
N/A
</span>
<div className="rounded-1 bg-primary" style={{ height: '16px', width: '0' }} />
</>
}
</div>
<div className="rounded-1 bg-primary" style={{ height: '16px', width: '0' }} />
</>
}
</div>

<div className="rounded-1 mx-2 bg-white position-relative shadow-sm" style={{ width: '14%' }}>
{genome.sequence_fit ?
<>
<div className="rounded-1 mx-2 bg-white position-relative shadow-sm" style={{ width: '14%' }}>
{genome.sequence_fit ?
<>
<span
className={`text-xs position-absolute start-50 top-50 translate-middle ${(genome.sequence_fit || 0) * 100 > 30 ? 'text-white' : 'text-dark'}`}>
{((genome.sequence_fit || 0) * 100).toFixed(2) + '%'}
</span>
<div className="rounded-1 bg-primary"
style={{ height: '16px', width: `${(genome.sequence_fit || 0) * 100}%` }} />
</>
:
<>
<div className="rounded-1 bg-primary"
style={{ height: '16px', width: `${(genome.sequence_fit || 0) * 100}%` }} />
</>
:
<>
<span className="text-xs position-absolute start-50 top-50 translate-middle text-dark">
N/A
</span>
<div className="rounded-1 bg-primary" style={{ height: '16px', width: '0' }} />
</>
}
</div>
<div className="rounded-1 bg-primary" style={{ height: '16px', width: '0' }} />
</>
}
</div>

<p className="mb-1 fw-medium ms-auto">Tier {genome.tier_ranking}</p>
<p className="mb-1 fw-medium ms-auto">Tier {genome.tier_ranking}</p>
</div>
</div>
</div>
</div>

</div>
</div>
</div>
</Link>
))}
</Modal.Body>
</Modal>
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