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@murataslan1 murataslan1 commented Jan 3, 2026

This PR resolves issue #449 by adding a new CLI command cortex fix-docker. The tool:

  • Diagnoses container User/Group settings.
  • Scans bind mounts for permission mismatches (UID/GID validation).
  • Suggests actionable fixes (chown commands or docker-compose.yml 'user' config).
  • Uses project's existing Rich branding for a consistent UI.

Tested locally with various container configurations.

AI Disclosure

Please indicate if you used AI tools during development:

  • AI/IDE/Agents used (please describe below)

Used Antigravity agent to implement the Docker permission fixer and address review comments.

Summary by CodeRabbit

  • New Features
    • Added a fix-docker CLI command (alias docker-fix) to diagnose and address Docker permission issues.
    • Interactive tool lists running containers, inspects selected containers, and detects bind-mount ownership mismatches between host and container users.
    • Provides clear, actionable recommendations to resolve permission problems by mapping UID/GID or adjusting host permissions.

✏️ Tip: You can customize this high-level summary in your review settings.

Copilot AI review requested due to automatic review settings January 3, 2026 08:55
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Note

Other AI code review bot(s) detected

CodeRabbit has detected other AI code review bot(s) in this pull request and will avoid duplicating their findings in the review comments. This may lead to a less comprehensive review.

📝 Walkthrough

Walkthrough

Adds a new DockerPermissionFixer utility and a CLI command (fix-docker / docker-fix) that lists containers, inspects a chosen container, compares host UID/GID to container user mappings, and prints diagnostics and recommendations.

Changes

Cohort / File(s) Summary
CLI Integration
cortex/cli.py
Added CortexCLI.fix_docker(self) -> int, registered fix-docker and docker-fix subcommands, and dispatches those commands to call CortexCLI.fix_docker() in main
Docker Permission Fixer Module
cortex/docker_fixer.py
New module adding DockerPermissionFixer with __init__, _run_docker_command, list_containers, inspect_container, diagnose, run, and a if __name__ == "__main__" entry point; implements listing, inspection, diagnosis, interactive selection, and recommendation output

Sequence Diagram

sequenceDiagram
    participant User as User
    participant CLI as CortexCLI
    participant Fixer as DockerPermissionFixer
    participant Docker as Docker Daemon

    rect rgb(235,245,255)
    User->>CLI: run `fix-docker` / `docker-fix`
    CLI->>Fixer: instantiate and call run()
    end

    rect rgb(255,250,235)
    Fixer->>Docker: `docker ps` (list_containers)
    Docker-->>Fixer: container list
    Fixer->>User: display containers & prompt selection
    User->>Fixer: select container ID
    end

    rect rgb(235,255,240)
    Fixer->>Docker: `docker inspect <id>` (inspect_container)
    Docker-->>Fixer: container JSON
    Fixer->>Fixer: diagnose() — parse user, mounts, compare host UID/GID
    Fixer->>User: print diagnostics and recommendations
    end
Loading

Estimated code review effort

🎯 3 (Moderate) | ⏱️ ~20 minutes

Poem

🐰 I hop through mounts and take a look,

I list the docks and read the book,
I match your UID, I sniff the gid,
I print the notes to fix what’s hid,
A tiny hop — permissions unhooked.

Pre-merge checks and finishing touches

✅ Passed checks (3 passed)
Check name Status Explanation
Title check ✅ Passed The title clearly and concisely describes the main change: implementing a Docker permission fixer tool, and includes the issue number for reference.
Description check ✅ Passed The description follows the template structure with Related Issue, Summary, and AI Disclosure sections, but the Checklist section is incomplete with required items unchecked.
Docstring Coverage ✅ Passed Docstring coverage is 88.89% which is sufficient. The required threshold is 80.00%.
✨ Finishing touches
  • 📝 Generate docstrings

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CLA Verification Passed

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Actionable comments posted: 5

🧹 Nitpick comments (3)
cortex/docker_fixer.py (3)

86-87: Add space after # in comment (PEP 8).

🔎 Proposed fix
-# Default to root if not specified
+# Default to root if not specified
 effective_uid = 0

Based on coding guidelines, follow PEP 8 style guide.


167-174: Remove extra leading space and verify container_name handling.

Line 167 has an extra leading space. Additionally, verify that container_name (from line 79) handles the case where details.get("Name", "") returns an empty string.

🔎 Proposed fix for spacing
-     console.print("\n[bold yellow]Option 1: Run as current host user[/bold yellow]")
+console.print("\n[bold yellow]Option 1: Run as current host user[/bold yellow]")

Based on coding guidelines, follow PEP 8 style guide.


182-184: Fix indentation in comment.

The indentation appears inconsistent in the comment section.

🔎 Proposed fix
-                    # If we knew the target UID strictly, we'd use that. 
-                    # For now, warn user to check container docs.
-                     console.print(f"  sudo chown -R <container_uid>:<container_gid> {source}")
+                    # If we knew the target UID strictly, we'd use that.
+                    # For now, warn user to check container docs.
+                    console.print(f"  sudo chown -R <container_uid>:<container_gid> {source}")

Based on coding guidelines, follow PEP 8 style guide.

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Review profile: CHILL

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Reviewing files that changed from the base of the PR and between c0a256b and e3517c6.

📒 Files selected for processing (2)
  • cortex/cli.py
  • cortex/docker_fixer.py
🧰 Additional context used
📓 Path-based instructions (1)
**/*.py

📄 CodeRabbit inference engine (AGENTS.md)

**/*.py: Follow PEP 8 style guide
Type hints required in Python code
Docstrings required for all public APIs

Files:

  • cortex/docker_fixer.py
  • cortex/cli.py
🧬 Code graph analysis (2)
cortex/docker_fixer.py (1)
cortex/branding.py (1)
  • cx_header (82-88)
cortex/cli.py (1)
cortex/docker_fixer.py (2)
  • DockerPermissionFixer (13-212)
  • run (186-212)
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🔇 Additional comments (8)
cortex/cli.py (3)

26-26: LGTM!

The import follows the existing pattern and correctly brings in the new DockerPermissionFixer class.


1867-1873: LGTM!

The CLI parser setup follows the existing patterns and correctly registers both the main command and alias.


1920-1921: LGTM!

The command routing correctly handles both the main command and its alias.

cortex/docker_fixer.py (5)

1-17: LGTM!

The imports are well-organized and the class docstring clearly describes the purpose of the diagnostic tool.


23-36: LGTM!

The method correctly handles docker command execution with appropriate error handling for missing docker executable.


38-59: LGTM!

The container listing logic correctly parses docker output and handles error cases appropriately.


61-71: LGTM!

The container inspection logic appropriately handles JSON parsing errors and returns None for failed inspections.


214-216: LGTM!

The main entry point follows the standard Python pattern and enables standalone execution of the diagnostic tool.

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Pull request overview

This PR adds a new cortex fix-docker CLI command (with alias docker-fix) that helps diagnose and fix Docker container permission issues. The tool analyzes running containers to identify UID/GID mismatches between the host and container environments, which commonly cause permission problems with bind mounts. It provides actionable recommendations including user mapping configurations and chown commands.

Key Changes

  • Implemented DockerPermissionFixer class with interactive diagnostics for container permission issues
  • Integrated the tool into the CLI with the fix-docker command and docker-fix alias
  • Added analysis of bind mounts, container user settings, and host file ownership

Reviewed changes

Copilot reviewed 2 out of 2 changed files in this pull request and generated 13 comments.

File Description
cortex/docker_fixer.py New module implementing the Docker permission diagnostics and fix suggestion tool
cortex/cli.py Added CLI command registration for fix-docker and handler method fix_docker()

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import json
import os
import subprocess
import sys
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The 'sys' module is imported but never used in this file. Remove this unused import to keep the code clean and follow best practices.

Suggested change
import sys

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owner_gid = stat.st_gid

status_icon = "✅"
status_msg = "[green]OK[/green]"
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The variable 'status_msg' is assigned but never used. Remove this unused variable to clean up the code.

Suggested change
status_msg = "[green]OK[/green]"

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# If container runs as non-root (e.g. 1000), it needs host files to be 1000 or readable/writable by 1000.

is_root_container = (effective_uid == 0)
is_host_owner_match = (owner_uid == self.host_uid)
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The variable 'is_host_owner_match' is assigned but never used. Remove this unused variable to clean up the code.

Suggested change
is_host_owner_match = (owner_uid == self.host_uid)

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Comment on lines +20 to +21
self.host_uid = os.getuid()
self.host_gid = os.getgid()
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The use of os.getuid() and os.getgid() without checking for POSIX system compatibility could cause AttributeError on non-POSIX systems (e.g., Windows). Consider adding a POSIX check similar to config_manager.py lines 79-80 before instantiating this class, or add the check in init and provide appropriate error handling or warnings for non-POSIX systems.

Suggested change
self.host_uid = os.getuid()
self.host_gid = os.getgid()
# Ensure compatibility with non-POSIX systems where os.getuid/os.getgid
# may not be available (e.g., Windows).
if hasattr(os, "getuid") and hasattr(os, "getgid"):
self.host_uid = os.getuid()
self.host_gid = os.getgid()
else:
console.print(
"[yellow]Warning: DockerPermissionFixer requires POSIX "
"os.getuid/os.getgid for accurate UID/GID detection. "
"Host UID/GID will be shown as 'N/A'.[/yellow]"
)
self.host_uid = "N/A"
self.host_gid = "N/A"

Copilot uses AI. Check for mistakes.
Comment on lines 73 to 186
def diagnose(self, container_id: str):
"""Diagnose permission issues for a specific container."""
details = self.inspect_container(container_id)
if not details:
return

container_name = details.get("Name", "").lstrip("/")
config = details.get("Config", {})
container_user = config.get("User", "")

console.print(f"\n[bold cyan]Diagnosing Container: {container_name}[/bold cyan] ({container_id[:12]})")

# 1. Check Container User
effective_uid = 0 # Default to root if not specified
effective_gid = 0

if container_user:
console.print(f" Existing User Config: [yellow]{container_user}[/yellow]")
# Try to parse UID:GID
parts = container_user.split(":")
try:
effective_uid = int(parts[0])
if len(parts) > 1:
effective_gid = int(parts[1])
except ValueError:
console.print(f" [dim]User '{container_user}' is a name, assuming mapped to UID inside image.[/dim]")
# In a real tool, we might exec into container to check 'id', but let's keep it simple/safe
else:
console.print(" Existing User Config: [red]Root (0:0)[/red] (Default)")

# 2. Check Bind Mounts
mounts = details.get("Mounts", [])
bind_mounts = [m for m in mounts if m["Type"] == "bind"]

if not bind_mounts:
console.print(" [green]No bind mounts detected. Permission issues unlikely.[/green]")
return

console.print(f" [bold]Found {len(bind_mounts)} bind mounts:[/bold]")

issues_found = False

for mount in bind_mounts:
source = mount["Source"]
destination = mount["Destination"]
rw = mount["RW"]

if not os.path.exists(source):
console.print(f" [dim]{source} -> {destination} (Site not found)[/dim]")
continue

try:
stat = os.stat(source)
owner_uid = stat.st_uid
owner_gid = stat.st_gid

status_icon = "✅"
status_msg = "[green]OK[/green]"

# Logic: If container runs as root (0), it can access host files (usually).
# But files created by container will be root-owned on host, causing issues for host user.
# If container runs as non-root (e.g. 1000), it needs host files to be 1000 or readable/writable by 1000.

is_root_container = (effective_uid == 0)
is_host_owner_match = (owner_uid == self.host_uid)

issues = []

if is_root_container:
if rw:
issues.append("[yellow]Writes will be owned by root on host[/yellow]")
status_icon = "⚠️"
else:
# Non-root container
if owner_uid != effective_uid:
# Mismatched UID. Can we write?
# This is a simplification. Group permissions matter too.
issues.append(f"[red]UID mismatch[/red] (Host: {owner_uid}, Container: {effective_uid})")
status_icon = "❌"
issues_found = True

issue_str = f" - {', '.join(issues)}" if issues else ""

console.print(f" {status_icon} [bold]{source}[/bold]")
console.print(f" -> {destination}")
console.print(f" Host Owner: UID={owner_uid}, GID={owner_gid} {issue_str}")

except Exception as e:
console.print(f" ❓ {source}: {e}")

# 3. Recommendations
console.print("\n[bold]Recommendations:[/bold]")

if effective_uid == 0:
console.print("\n[bold yellow]Option 1: Run as current host user[/bold yellow]")
console.print("To avoid root-owned files on your host machine, perform user mapping:")
console.print(f"\n [dim]# docker run command[/dim]")
console.print(f" docker run [green]--user {self.host_uid}:{self.host_gid}[/green] ...")
console.print(f"\n [dim]# docker-compose.yml[/dim]")
console.print(f" services:")
console.print(f" {container_name}:")
console.print(f" [green]user: \"{self.host_uid}:{self.host_gid}\"[/green]")

if issues_found:
console.print("\n[bold red]Option 2: Fix Host Permissions[/bold red]")
console.print("If the container *must* run as a specific user (e.g. postgres=999), change host ownership:")
for mount in bind_mounts:
source = mount["Source"]
if os.path.exists(source):
# If we knew the target UID strictly, we'd use that.
# For now, warn user to check container docs.
console.print(f" sudo chown -R <container_uid>:<container_gid> {source}")

def run(self):
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Missing return type annotation. Methods diagnose and run should have explicit return type annotations (-> None) for consistency with the codebase style. See doctor.py line 105 for an example: '_print_section(self, title: str) -> None'.

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import sys
from typing import Dict, List, Optional, Tuple

from rich.prompt import Confirm, Prompt
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The Confirm import from rich.prompt is imported but never used in this file. Remove this unused import to keep the code clean and follow best practices.

Suggested change
from rich.prompt import Confirm, Prompt
from rich.prompt import Prompt

Copilot uses AI. Check for mistakes.
try:
effective_uid = int(parts[0])
if len(parts) > 1:
effective_gid = int(parts[1])
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Variable effective_gid is not used.

Suggested change
effective_gid = int(parts[1])
effective_gid = int(parts[1])
console.print(f" Parsed numeric user: UID={effective_uid}, GID={effective_gid}")
else:
console.print(f" Parsed numeric user: UID={effective_uid}")

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@murataslan1 Please follow the updated contribution guidelines. We’ve added new rules around AI usage in CONTRIBUTING.md. 2e68b29
Kindly Update in all of your PRs.

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Actionable comments posted: 1

♻️ Duplicate comments (3)
cortex/docker_fixer.py (3)

132-132: Fix typo: "Site" should be "Source".

The commit message indicates this was fixed, but the typo remains. "Site not found" should read "Source not found" for clarity.

🔎 Proposed fix
-                console.print(f"    [dim]{source} -> {destination} (Site not found)[/dim]")
+                console.print(f"    [dim]{source} -> {destination} (Source not found)[/dim]")

Flagged in past review comments but not yet addressed despite commit message claiming "fix: address PR review feedback".


176-193: Fix indentation errors throughout recommendations section.

Multiple lines have incorrect indentation (one extra space), which will cause IndentationError at runtime. Lines 176-177, 181-183, 186-187, and 189-193 all have 13 spaces where 12 are expected (or 22 spaces where 21 are expected for line 193).

🔎 Proposed fix
         if effective_uid == 0:
-             console.print("\n[bold yellow]Option 1: Run as current host user[/bold yellow]")
-             console.print("To avoid root-owned files on your host machine, perform user mapping:")
-             console.print(f"\n  [dim]# docker run command[/dim]")
-             console.print(f"  docker run [green]--user {self.host_uid}:{self.host_gid}[/green] ...")
-             console.print(f"\n  [dim]# docker-compose.yml[/dim]")
-             console.print(f"  services:")
-             console.print(f"    {container_name}:")
-             console.print(f"      [green]user: \"{self.host_uid}:{self.host_gid}\"[/green]")
+            console.print("\n[bold yellow]Option 1: Run as current host user[/bold yellow]")
+            console.print("To avoid root-owned files on your host machine, perform user mapping:")
+            console.print(f"\n  [dim]# docker run command[/dim]")
+            console.print(f"  docker run [green]--user {self.host_uid}:{self.host_gid}[/green] ...")
+            console.print(f"\n  [dim]# docker-compose.yml[/dim]")
+            console.print(f"  services:")
+            console.print(f"    {container_name}:")
+            console.print(f"      [green]user: \"{self.host_uid}:{self.host_gid}\"[/green]")
         
         if issues_found:
-             console.print("\n[bold red]Option 2: Fix Host Permissions[/bold red]")
-             console.print("If the container *must* run as a specific user (e.g. postgres=999), change host ownership:")
-             for mount in bind_mounts:
-                 source = mount["Source"]
-                 if os.path.exists(source):
-                     # If we knew the target UID strictly, we'd use that. 
-                     # For now, warn user to check container docs.
-                      console.print(f"  sudo chown -R <container_uid>:<container_gid> {source}")
+            console.print("\n[bold red]Option 2: Fix Host Permissions[/bold red]")
+            console.print("If the container *must* run as a specific user (e.g. postgres=999), change host ownership:")
+            for mount in bind_mounts:
+                source = mount["Source"]
+                if os.path.exists(source):
+                    # If we knew the target UID strictly, we'd use that. 
+                    # For now, warn user to check container docs.
+                    console.print(f"  sudo chown -R <container_uid>:<container_gid> {source}")

Based on coding guidelines (PEP 8). Flagged in past review comments but not addressed.


97-97: Fix inline comment spacing per PEP 8.

The inline comment needs at least two spaces before the # character.

🔎 Proposed fix
-        effective_uid = 0 # Default to root if not specified
+        effective_uid = 0  # Default to root if not specified

Based on coding guidelines (PEP 8). Flagged in past review comments.

🧹 Nitpick comments (1)
cortex/docker_fixer.py (1)

107-107: Remove or utilize the unused variable.

effective_gid is assigned but never used afterward. Either remove it or incorporate it into the permission checks.

🔎 Proposed fix

If the variable is not needed:

                 effective_uid = int(parts[0])
-                if len(parts) > 1:
-                    effective_gid = int(parts[1])

Or if GID checking should be added:

                effective_uid = int(parts[0])
                if len(parts) > 1:
                    effective_gid = int(parts[1])
                # Later in the code, add GID mismatch checks similar to UID checks

Flagged in past review comments.

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Review profile: CHILL

Plan: Pro

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Reviewing files that changed from the base of the PR and between e3517c6 and a979892.

📒 Files selected for processing (2)
  • cortex/cli.py
  • cortex/docker_fixer.py
🚧 Files skipped from review as they are similar to previous changes (1)
  • cortex/cli.py
🧰 Additional context used
📓 Path-based instructions (1)
**/*.py

📄 CodeRabbit inference engine (AGENTS.md)

**/*.py: Follow PEP 8 style guide
Type hints required in Python code
Docstrings required for all public APIs

Files:

  • cortex/docker_fixer.py
🧠 Learnings (2)
📚 Learning: 2025-12-11T12:03:24.071Z
Learnt from: CR
Repo: cortexlinux/cortex PR: 0
File: AGENTS.md:0-0
Timestamp: 2025-12-11T12:03:24.071Z
Learning: Applies to **/*.py : Follow PEP 8 style guide

Applied to files:

  • cortex/docker_fixer.py
📚 Learning: 2025-12-11T12:03:24.071Z
Learnt from: CR
Repo: cortexlinux/cortex PR: 0
File: AGENTS.md:0-0
Timestamp: 2025-12-11T12:03:24.071Z
Learning: Applies to **/*.py : Type hints required in Python code

Applied to files:

  • cortex/docker_fixer.py
🧬 Code graph analysis (1)
cortex/docker_fixer.py (1)
cortex/branding.py (1)
  • cx_header (82-88)
🪛 GitHub Check: lint
cortex/docker_fixer.py

[failure] 72-72: Ruff (UP045)
cortex/docker_fixer.py:72:55: UP045 Use X | None for type annotations


[failure] 49-49: Ruff (UP006)
cortex/docker_fixer.py:49:39: UP006 Use dict instead of Dict for type annotation


[failure] 49-49: Ruff (UP006)
cortex/docker_fixer.py:49:34: UP006 Use list instead of List for type annotation


[failure] 34-34: Ruff (UP006)
cortex/docker_fixer.py:34:55: UP006 Use tuple instead of Tuple for type annotation


[failure] 34-34: Ruff (UP006)
cortex/docker_fixer.py:34:41: UP006 Use list instead of List for type annotation


[failure] 5-5: Ruff (UP035)
cortex/docker_fixer.py:5:1: UP035 typing.Tuple is deprecated, use tuple instead


[failure] 5-5: Ruff (UP035)
cortex/docker_fixer.py:5:1: UP035 typing.List is deprecated, use list instead


[failure] 5-5: Ruff (UP035)
cortex/docker_fixer.py:5:1: UP035 typing.Dict is deprecated, use dict instead


[failure] 1-10: Ruff (I001)
cortex/docker_fixer.py:1:1: I001 Import block is un-sorted or un-formatted

🪛 GitHub Check: Lint
cortex/docker_fixer.py

[failure] 72-72: Ruff (UP045)
cortex/docker_fixer.py:72:55: UP045 Use X | None for type annotations


[failure] 49-49: Ruff (UP006)
cortex/docker_fixer.py:49:39: UP006 Use dict instead of Dict for type annotation


[failure] 49-49: Ruff (UP006)
cortex/docker_fixer.py:49:34: UP006 Use list instead of List for type annotation


[failure] 34-34: Ruff (UP006)
cortex/docker_fixer.py:34:55: UP006 Use tuple instead of Tuple for type annotation


[failure] 34-34: Ruff (UP006)
cortex/docker_fixer.py:34:41: UP006 Use list instead of List for type annotation


[failure] 5-5: Ruff (UP035)
cortex/docker_fixer.py:5:1: UP035 typing.Tuple is deprecated, use tuple instead


[failure] 5-5: Ruff (UP035)
cortex/docker_fixer.py:5:1: UP035 typing.List is deprecated, use list instead


[failure] 5-5: Ruff (UP035)
cortex/docker_fixer.py:5:1: UP035 typing.Dict is deprecated, use dict instead


[failure] 1-10: Ruff (I001)
cortex/docker_fixer.py:1:1: I001 Import block is un-sorted or un-formatted

⏰ Context from checks skipped due to timeout of 90000ms. You can increase the timeout in your CodeRabbit configuration to a maximum of 15 minutes (900000ms). (3)
  • GitHub Check: test (3.12)
  • GitHub Check: test (3.10)
  • GitHub Check: test (3.11)
🔇 Additional comments (2)
cortex/docker_fixer.py (2)

19-32: LGTM! Well-structured initialization with proper error handling.

The __init__ method now includes a comprehensive docstring and implements the POSIX compatibility check, addressing previous review feedback. The OSError for non-POSIX systems provides clear guidance to users.


195-221: LGTM! Well-structured interactive wizard.

The run method provides a clear user flow with proper table display and input validation. The docstring and return type annotation address previous review feedback.

Comment on lines 1 to 10
import json
import os
import subprocess

from typing import Dict, List, Optional, Tuple

from rich.prompt import Confirm, Prompt
from rich.table import Table

from cortex.branding import console, cx_header
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⚠️ Potential issue | 🔴 Critical

Update imports to use modern type annotations and remove unused import.

Multiple issues with the import block:

  1. Line 5 uses deprecated typing generics (Dict, List, Optional, Tuple) instead of built-in types. Per PEP 585 (Python 3.9+) and project conventions, use lowercase built-in generics.
  2. Line 7 imports Confirm but it's never used (only Prompt is used on line 218).
  3. The import block is unsorted/unformatted per Ruff I001.
🔎 Proposed fix
 import json
 import os
 import subprocess
-
-from typing import Dict, List, Optional, Tuple
-
-from rich.prompt import Confirm, Prompt
+from typing import Optional
+
+from rich.prompt import Prompt
 from rich.table import Table
-
+
 from cortex.branding import console, cx_header

Then update all type annotations throughout the file:

  • List[str]list[str]
  • Dict[str, str]dict[str, str]
  • Tuple[bool, str, str]tuple[bool, str, str]
  • Optional[Dict]dict | None or Optional[dict]

Based on coding guidelines and static analysis (Ruff UP035, UP006, UP045, I001). Also addresses past review comment about updating to modern type annotations.

Committable suggestion skipped: line range outside the PR's diff.

🧰 Tools
🪛 GitHub Check: lint

[failure] 5-5: Ruff (UP035)
cortex/docker_fixer.py:5:1: UP035 typing.Tuple is deprecated, use tuple instead


[failure] 5-5: Ruff (UP035)
cortex/docker_fixer.py:5:1: UP035 typing.List is deprecated, use list instead


[failure] 5-5: Ruff (UP035)
cortex/docker_fixer.py:5:1: UP035 typing.Dict is deprecated, use dict instead


[failure] 1-10: Ruff (I001)
cortex/docker_fixer.py:1:1: I001 Import block is un-sorted or un-formatted

🪛 GitHub Check: Lint

[failure] 5-5: Ruff (UP035)
cortex/docker_fixer.py:5:1: UP035 typing.Tuple is deprecated, use tuple instead


[failure] 5-5: Ruff (UP035)
cortex/docker_fixer.py:5:1: UP035 typing.List is deprecated, use list instead


[failure] 5-5: Ruff (UP035)
cortex/docker_fixer.py:5:1: UP035 typing.Dict is deprecated, use dict instead


[failure] 1-10: Ruff (I001)
cortex/docker_fixer.py:1:1: I001 Import block is un-sorted or un-formatted

🤖 Prompt for AI Agents
In cortex/docker_fixer.py around lines 1 to 10, the import block uses deprecated
typing generics and contains an unused import and unsorted imports; remove the
typing imports Dict, List, Optional, Tuple and instead use built-in generics in
annotations throughout the file (e.g., List[str] → list[str], Dict[str, str] →
dict[str, str], Tuple[bool, str, str] → tuple[bool, str, str], Optional[Dict] →
dict | None), drop the unused Confirm import (only Prompt is used), and
reorder/format the imports to satisfy Ruff I001 (alphabetize and group standard,
third-party, local imports).

@sonarqubecloud
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Actionable comments posted: 1

🧹 Nitpick comments (1)
cortex/docker_fixer.py (1)

100-105: Consider extracting GID when parsing numeric user strings.

When container_user contains a colon-separated UID:GID pair (line 100), only the UID is extracted (line 102). While the current logic only checks UID mismatches, extracting the GID would make the parsing more complete and enable future enhancements.

🔎 Proposed refactor
             parts = container_user.split(":")
             try:
                 effective_uid = int(parts[0])
+                effective_gid = int(parts[1]) if len(parts) > 1 else 0
+                console.print(f"  Parsed numeric user: UID={effective_uid}, GID={effective_gid}")
             except ValueError:
                 console.print(f"  [dim]User '{container_user}' is a name, assuming mapped to UID inside image.[/dim]")
-                # In a real tool, we might exec into container to check 'id', but let's keep it simple/safe
📜 Review details

Configuration used: defaults

Review profile: CHILL

Plan: Pro

📥 Commits

Reviewing files that changed from the base of the PR and between a979892 and d2ff377.

📒 Files selected for processing (1)
  • cortex/docker_fixer.py
🧰 Additional context used
📓 Path-based instructions (1)
**/*.py

📄 CodeRabbit inference engine (AGENTS.md)

**/*.py: Follow PEP 8 style guide
Type hints required in Python code
Docstrings required for all public APIs

Files:

  • cortex/docker_fixer.py
🧠 Learnings (2)
📚 Learning: 2025-12-11T12:03:24.071Z
Learnt from: CR
Repo: cortexlinux/cortex PR: 0
File: AGENTS.md:0-0
Timestamp: 2025-12-11T12:03:24.071Z
Learning: Applies to **/*.py : Follow PEP 8 style guide

Applied to files:

  • cortex/docker_fixer.py
📚 Learning: 2025-12-11T12:03:24.071Z
Learnt from: CR
Repo: cortexlinux/cortex PR: 0
File: AGENTS.md:0-0
Timestamp: 2025-12-11T12:03:24.071Z
Learning: Applies to **/*.py : Type hints required in Python code

Applied to files:

  • cortex/docker_fixer.py
🧬 Code graph analysis (1)
cortex/docker_fixer.py (1)
cortex/branding.py (1)
  • cx_header (82-88)
🪛 GitHub Check: lint
cortex/docker_fixer.py

[failure] 176-176: Ruff (F541)
cortex/docker_fixer.py:176:27: F541 f-string without any placeholders


[failure] 175-175: Ruff (F541)
cortex/docker_fixer.py:175:27: F541 f-string without any placeholders


[failure] 173-173: Ruff (F541)
cortex/docker_fixer.py:173:27: F541 f-string without any placeholders

🪛 GitHub Check: Lint
cortex/docker_fixer.py

[failure] 176-176: Ruff (F541)
cortex/docker_fixer.py:176:27: F541 f-string without any placeholders


[failure] 175-175: Ruff (F541)
cortex/docker_fixer.py:175:27: F541 f-string without any placeholders


[failure] 173-173: Ruff (F541)
cortex/docker_fixer.py:173:27: F541 f-string without any placeholders

⏰ Context from checks skipped due to timeout of 90000ms. You can increase the timeout in your CodeRabbit configuration to a maximum of 15 minutes (900000ms). (2)
  • GitHub Check: test (3.10)
  • GitHub Check: test (3.11)
🔇 Additional comments (6)
cortex/docker_fixer.py (6)

1-8: LGTM! Import block is clean.

The imports correctly use modern type hints and are properly organized. Past review issues have been resolved.


17-30: LGTM! Proper POSIX compatibility check.

The __init__ method correctly validates POSIX compatibility and includes comprehensive documentation. Past review issues have been addressed.


32-45: LGTM! Robust subprocess handling.

The helper method has proper error handling for both Docker executable not found and general exceptions.


47-80: LGTM! Container listing and inspection methods are well-structured.

Both methods have proper error handling, clear return types, and handle edge cases appropriately (empty output, JSON decode errors, etc.).


190-216: LGTM! Interactive wizard is well-structured.

The method provides a clean user experience with Rich table display and input validation via Prompt.ask with constrained choices.


219-221: LGTM! Standard module entry point.

The __main__ block follows Python conventions for direct execution.

Comment on lines +173 to +176
console.print(f"\n [dim]# docker run command[/dim]")
console.print(f" docker run [green]--user {self.host_uid}:{self.host_gid}[/green] ...")
console.print(f"\n [dim]# docker-compose.yml[/dim]")
console.print(f" services:")
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⚠️ Potential issue | 🟡 Minor

Remove unnecessary f-string prefix on lines without placeholders.

Lines 173, 175, and 176 use f-strings but contain no interpolation placeholders, causing Ruff F541 linter errors.

🔎 Proposed fix
-            console.print(f"\n  [dim]# docker run command[/dim]")
+            console.print("\n  [dim]# docker run command[/dim]")
             console.print(f"  docker run [green]--user {self.host_uid}:{self.host_gid}[/green] ...")
-            console.print(f"\n  [dim]# docker-compose.yml[/dim]")
-            console.print(f"  services:")
+            console.print("\n  [dim]# docker-compose.yml[/dim]")
+            console.print("  services:")

Based on static analysis hints.

📝 Committable suggestion

‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.

Suggested change
console.print(f"\n [dim]# docker run command[/dim]")
console.print(f" docker run [green]--user {self.host_uid}:{self.host_gid}[/green] ...")
console.print(f"\n [dim]# docker-compose.yml[/dim]")
console.print(f" services:")
console.print("\n [dim]# docker run command[/dim]")
console.print(f" docker run [green]--user {self.host_uid}:{self.host_gid}[/green] ...")
console.print("\n [dim]# docker-compose.yml[/dim]")
console.print(" services:")
🧰 Tools
🪛 GitHub Check: lint

[failure] 176-176: Ruff (F541)
cortex/docker_fixer.py:176:27: F541 f-string without any placeholders


[failure] 175-175: Ruff (F541)
cortex/docker_fixer.py:175:27: F541 f-string without any placeholders


[failure] 173-173: Ruff (F541)
cortex/docker_fixer.py:173:27: F541 f-string without any placeholders

🪛 GitHub Check: Lint

[failure] 176-176: Ruff (F541)
cortex/docker_fixer.py:176:27: F541 f-string without any placeholders


[failure] 175-175: Ruff (F541)
cortex/docker_fixer.py:175:27: F541 f-string without any placeholders


[failure] 173-173: Ruff (F541)
cortex/docker_fixer.py:173:27: F541 f-string without any placeholders

🤖 Prompt for AI Agents
In cortex/docker_fixer.py around lines 173 to 176, three console.print calls use
f-strings without any interpolation (lines 173, 175 and 176) which triggers Ruff
F541; remove the unnecessary leading "f" from those string literals so they
become plain strings while leaving the one line that actually interpolates (the
--user {self.host_uid}:{self.host_gid}) unchanged.

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@murataslan1 This PR doesn’t follow the contributing.md guidelines yet.
Tests, documentation, a demo videoare missing.
Marking this as draft until those are added. Please update and ping once done.

@Anshgrover23 Anshgrover23 marked this pull request as draft January 5, 2026 11:12
@mikejmorgan-ai mikejmorgan-ai self-assigned this Jan 10, 2026
@Anshgrover23 Anshgrover23 marked this pull request as ready for review January 16, 2026 13:02
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@murataslan1 Kindly resolve conflicts.

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3 participants