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Laboratory of Food Systems Biotechnology

Bokulich Lab (FSB), Institute of Food, Nutrition, and Health, D-HEST, ETH Zurich

68 followers
Zurich, Switzerland
https://fsb.ethz.ch/

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RESCRIPt RESCRIPt Public

REference Sequence annotation and CuRatIon Pipeline

Python 98 25
q2-fondue q2-fondue Public

Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere

Python 25 8
q2-assembly q2-assembly Public

QIIME 2 plugin for (meta)genome assembly.

Python 2 14
q2-annotate q2-annotate Public

QIIME 2 plugin for functional annotation and taxonomic classification of shotgun metagenomes.

Python 4 20

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Showing 10 of 32 repositories

q2-annotate Public
QIIME 2 plugin for functional annotation and taxonomic classification of shotgun metagenomes.

bokulich-lab/q2-annotate’s past year of commit activity

Python 4 BSD-3-Clause 20 22 6 Updated Jan 8, 2026
RESCRIPt Public
REference Sequence annotation and CuRatIon Pipeline

bokulich-lab/RESCRIPt’s past year of commit activity

Python 98 BSD-3-Clause 25 15 (1 issue needs help) 0 Updated Jan 4, 2026
q2-fondue Public
Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere

bokulich-lab/q2-fondue’s past year of commit activity

Python 25 BSD-3-Clause 8 13 0 Updated Dec 23, 2025
q2-minimap2 Public
QIIME 2 plugin for sequence alignment using minimap2.

bokulich-lab/q2-minimap2’s past year of commit activity

Python 3 BSD-3-Clause 3 1 1 Updated Dec 23, 2025
q2-long-reads-qc Public
QIIME2 plugin for quality control analysis of long-read sequences.

bokulich-lab/q2-long-reads-qc’s past year of commit activity

Python 2 BSD-3-Clause 0 0 0 Updated Dec 23, 2025
nf-moshpit Public

bokulich-lab/nf-moshpit’s past year of commit activity

Nextflow 3 BSD-3-Clause 1 1 0 Updated Dec 5, 2025
q2-ena-uploader Public
QIIME 2 plugin for submission of metadata and raw sequence reads to ENA.

bokulich-lab/q2-ena-uploader’s past year of commit activity

Python 0 BSD-3-Clause 1 0 0 Updated Dec 5, 2025
mishmash Public

bokulich-lab/mishmash’s past year of commit activity

Python 2 BSD-3-Clause 1 7 0 Updated Nov 25, 2025
moshpit-docs Public
MOSHPIT plugin suite documentation

bokulich-lab/moshpit-docs’s past year of commit activity

Makefile 0 BSD-3-Clause 8 1 1 Updated Nov 14, 2025
q2-checkm Public
QIIME 2 plugin for assessing the quality of (meta)genomes using CheckM.

bokulich-lab/q2-checkm’s past year of commit activity

Python 0 BSD-3-Clause 3 0 0 Updated Nov 14, 2025

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