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Major discrepancies between ESPRESSO Q & other long-read quantification methods

Status: Open.

#84 In Xinglab/espresso;

· sbresnahan opened on Apr 20, 2025

Espresso companion dataset

Status: Open.

#83 In Xinglab/espresso;

· tinatucci opened on Apr 9, 2025

ESPRESSO can merge novel transcript from different sample ?

Status: Open.

#81 In Xinglab/espresso;

· PWD2 opened on Feb 26, 2025

could not load Parasail module needed for Smith-Waterman

Status: Open.

#80 In Xinglab/espresso;

· maronem opened on Nov 8, 2024

could not load Parasail module needed for Smith-Waterman

Status: Open.

#79 In Xinglab/espresso;

· border-info-nt opened on Nov 7, 2024

Unclear output from ESPRESSO_Q summary.txt

Status: Open.

#78 In Xinglab/espresso;

· pclavell opened on Oct 22, 2024

reference for this pipeline

Status: Open.

#69 In Xinglab/espresso;

· mlpy18 opened on Aug 3, 2024

Transcripts support different numbers of reads

Status: Open.

#66 In Xinglab/espresso;

· liuxiaoning-wq opened on Jul 20, 2024

Novel isoform not detected

Status: Open.

#62 In Xinglab/espresso;

· stfacc opened on Jul 3, 2024

ESPRESSO test not working with 112 threads

Status: Open.

#56 In Xinglab/espresso;

· pclavell opened on Jun 10, 2024

Out of memory

Status: Open.

#45 In Xinglab/espresso;

· Jean497 opened on Jan 9, 2024

Handling ‘NA’ Gene IDs and Annotation of GTF Files in ESPRESSO

Status: Open.

#42 In Xinglab/espresso;

· yycc9897 opened on Nov 21, 2023