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fix google colab #3

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fix google colab #3

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fa20a4c
fix google colab
Sajjad-scbas Oct 27, 2025
deb9e61
fix Google Colab
Sajjad-scbas Oct 27, 2025
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2 changes: 1 addition & 1 deletion predict_zaugnet.py
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Original file line number Diff line number Diff line change
Expand Up @@ -21,7 +21,7 @@ def load_model(cfg, dataset, model_name):

zaug = ZAugGenerator(cfg)
zaug.set_multiple_gpus()
zaug.load_state_dict(torch.load(path_model))
zaug.load_state_dict(torch.load(path_model, map_location=f"cuda:{cfg.device_ids[0]}"))
zaug.eval()

return zaug
Expand Down
2 changes: 1 addition & 1 deletion predict_zaugnet_plus.py
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Original file line number Diff line number Diff line change
Expand Up @@ -19,7 +19,7 @@ def load_model(cfg, dataset, model_name):
print(f"The model used for this prediction : {path_model}")
zaug = ZAugGenerator(cfg)
zaug.set_multiple_gpus()
zaug.load_state_dict(torch.load(path_model))
zaug.load_state_dict(torch.load(path_model, map_location=f"cuda:{cfg.device_ids[0]}"))
zaug.eval()

return zaug
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38 changes: 1 addition & 37 deletions zaugnet_colab.ipynb
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Expand Up @@ -88,7 +88,6 @@
"outputs": [],
"source": [
"!git clone https://github.com/VirtualEmbryo/ZAugNet.git"
<<<<<<< HEAD
]
},
{
Expand Down Expand Up @@ -122,43 +121,8 @@
"!mv /content/ZAugNet/zaugnet_data_and_models/zenodo/humans /content/ZAugNet/data/humans\n",
"!mv /content/ZAugNet/zaugnet_data_and_models/zenodo/nuclei /content/ZAugNet/data/nuclei\n",
"!mv /content/ZAugNet/zaugnet_data_and_models/zenodo/results /content/ZAugNet/results"
=======
>>>>>>> 24dd0f40c0f345e5b34afd3b910460dc071e1e15
]
},
{
"cell_type": "markdown",
"source": [
"* **(Optional)** Download train/test data images and pre-trained models:"
],
"metadata": {
"id": "WdKYdfzX2nge"
}
},
{
"cell_type": "code",
"source": [
"# Download data and pre-trained models from Zenodo\n",
"!curl \"https://zenodo.org/records/14961732/files/zenodo.zip?download=1\" --output /content/ZAugNet/zaugnet_data_and_models.zip\n",
"\n",
"# Unzip the folder\n",
"import shutil\n",
"shutil.unpack_archive(\"/content/ZAugNet/zaugnet_data_and_models.zip\", \"/content/ZAugNet/zaugnet_data_and_models\")\n",
"\n",
"# Create data folder and move files\n",
"!mkdir /content/ZAugNet/data\n",
"!mv /content/ZAugNet/zaugnet_data_and_models/zenodo/ascidians /content/ZAugNet/data/ascidians\n",
"!mv /content/ZAugNet/zaugnet_data_and_models/zenodo/filaments /content/ZAugNet/data/filaments\n",
"!mv /content/ZAugNet/zaugnet_data_and_models/zenodo/humans /content/ZAugNet/data/humans\n",
"!mv /content/ZAugNet/zaugnet_data_and_models/zenodo/nuclei /content/ZAugNet/data/nuclei\n",
"!mv /content/ZAugNet/zaugnet_data_and_models/zenodo/results /content/ZAugNet/results"
],
"metadata": {
"id": "osmjfhvc23lq"
},
"execution_count": null,
"outputs": []
},
{
"cell_type": "markdown",
"metadata": {
Expand Down Expand Up @@ -456,4 +420,4 @@
},
"nbformat": 4,
"nbformat_minor": 0
}
}