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TravisWheelerLab / sufr Public

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Rework `set_suffix_array_mem` method of SufrFile to avoid redundant re-loading#9

Merged

georgeglidden merged 5 commits intoTravisWheelerLab:mainTravisWheelerLab/sufr:mainfrom

georgeglidden:maingeorgeglidden/sufr:mainCopy head branch name to clipboard

Apr 3, 2025

Conversation Commits5 (5)Checks Files changed

Merged

Rework `set_suffix_array_mem` method of SufrFile to avoid redundant re-loading#9
georgeglidden merged 5 commits intoTravisWheelerLab:mainfrom
georgeglidden:main

Commits

Commits on Mar 26, 2025

prototype of behavior that only loads the suffix array once when low_memory = false
georgeglidden
committed
early return is already implemented; revert previous changes. why is it not triggering?
georgeglidden
committed
always check for early return condition; set suffix_array_mem_mql to max_query_len to avoid None values causing re-loading on every call to set_suffix_array_mem
georgeglidden
committed
remove print statements
georgeglidden
committed
Merge pull request #1 from georgeglidden/optimize-lowmem-false
georgeglidden
authored

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