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SharuPaul/README.md

Hi there 👋

I'm Sharu Paul, a Research Scientist in Bioinformatics working in the Genome Informatics Facility at Iowa State University. I collaborate with USDA researchers, faculty at ISU, and industry scientists for pipeline development and data analysis across multiple projects.

🔭 I’m currently

  • Studying infection response, cell type characterization using Single Cell RNAseq in multiple species
  • Analyzing proteomics to study adverse reproductive effects of treatments such as heat stress, forever chemicals, and carcinogens
  • Implementing a Transformer based model for DNA analysis
  • Writing workbooks and conducting workshops for researchers early in their bioinformatics journey

🌱 I’m interested in

  • Applying Deep Neural Networks in medicine
  • Single cell and spatial technologies

💬 Ask me about

  • Transposons in maize

📫 How to reach me

⚡ Fun fact

  • I named a new species - Candidatus Haliotispira prima gen. nov., sp. nov.

🧬 Words to do science by

An amazing advisor once said to me: "In science, there is always a balance between absolute truth and useful truth. It is better to strive for useful truth and get things done than absolute truth and never finish".

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  1. ISUgenomics/bioinformatics-workbook ISUgenomics/bioinformatics-workbook Public

    Bioinformatics Workbook repository

    HTML 199 93

  2. ISUgenomics/datascience-workbook ISUgenomics/datascience-workbook Public

    Introduction to large scale computing and data wrangling with hands-on tutorials

    HTML 16 7

  3. molikd/otb molikd/otb Public

    Only The Best (Genome Assembly Tools)

    Nextflow 5 3

  4. RNASeq RNASeq Public

    NextFlow dsl2 pipeline for RNASeq analysis

    Nextflow

  5. ISUgenomics/isu-commandline-intro-2025 ISUgenomics/isu-commandline-intro-2025 Public

    An introduction to the command line.

    Shell