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Add new sections to the CLI user guide explaining how to:

  • Skip specific checks using the --ignore flag with single or comma-separated check names
  • Run only specific checks using the --select flag

Include a note about heuristic-based checks that may produce false positives for edge cases like long-running experiments.

fix #645

Add new sections to the CLI user guide explaining how to:
- Skip specific checks using the --ignore flag with single or
  comma-separated check names
- Run only specific checks using the --select flag

Include a note about heuristic-based checks that may produce false
positives for edge cases like long-running experiments.
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Improve documentation for skipping heuristic based checks

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