suvtk (Submission of Uncultivated Viral genomes toolkit)

Warning

suvtk is still under active development. If you encounter any problems, please let me know by creating an issue.

Tool to submit viral sequences to Genbank.

Documentation

Documentation for the tool (including installation instruction) is available here.

Usage

For help, run:

suvtk --help

You can also use:

python -m suvtk --help

Development

To contribute to this tool, first checkout the code. Then create a new virtual environment:

cd suvtk
python -m venv venv
source venv/bin/activate

Now install the dependencies and test dependencies:

pip install -e '.[test]'

To run the tests:

python -m pytest