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Write valid ProteomeXchange XML for datasets that do not have any Unimod modifications #500

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Merged
vagisha merged 1 commit into from
Feb 4, 2025
Merged

Write valid ProteomeXchange XML for datasets that do not have any Unimod modifications #500

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2 changes: 1 addition & 1 deletion panoramapublic/src/org/labkey/panoramapublic/proteomexchange/PxXmlWriter.java
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Original file line number Diff line number Diff line change
Expand Up @@ -391,7 +391,7 @@ void writeModificationList(Status validationStatus) throws PxException
*/
Element mod_list = new Element("ModificationList");
var mods = validationStatus.getModifications();
if(mods.size() == 0)
if(mods.size() == 0 || mods.stream().noneMatch(Modification::isValid))
{
mod_list.addChild(new CvParamElement("MS", "MS:1002864", "No PTMs are included in the dataset"));
}
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