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Enhance logging for patient data completeness #137

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Merged
mducducd merged 3 commits into from
Dec 4, 2025
Merged

Enhance logging for patient data completeness #137

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c827346
Enhance logging for patient data completeness
mducducd Dec 4, 2025
45bb2a2
Refactor survival status handling and cleanup code
mducducd Dec 4, 2025
a2847ae
Refactor and data cleaning
mducducd Dec 4, 2025
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9 changes: 7 additions & 2 deletions src/stamp/modeling/data.py
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Original file line number Diff line number Diff line change
Expand Up @@ -813,9 +813,14 @@ def filter_complete_patient_data_(
)
}

total_clini = len(patient_to_ground_truth)
total_slides = len(patient_to_slides)
final_patients = len(patients)

_logger.info(
f"Kept {len(patient_to_ground_truth)}/{len(patient_to_ground_truth)} \
patients with complete data ({len(patient_to_ground_truth) / len(patient_to_ground_truth):.1%})."
f"Total patients in clinical table: {total_clini}\n"
f"Patients appearing in slide table: {total_slides}\n"
f"Final usable patients (complete data): {final_patients}\n"
)
return patients

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