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Enhance logging for patient data completeness #136

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Enhance logging for patient data completeness #136

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6 changes: 4 additions & 2 deletions src/stamp/modeling/data.py
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Original file line number Diff line number Diff line change
Expand Up @@ -814,9 +814,11 @@
}

_logger.info(
f"Kept {len(patient_to_ground_truth)}/{len(patient_to_ground_truth)} \
patients with complete data ({len(patient_to_ground_truth) / len(patient_to_ground_truth):.1%})."
f"Total patients in clinical table: {total_clini}\n"

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src/stamp/modeling/data.py:817:46: F821 Undefined name `total_clini`
f"Patients appearing in slide table: {total_slides}\n"

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src/stamp/modeling/data.py:818:47: F821 Undefined name `total_slides`
f"Final usable patients (complete data): {final_patients}\n"

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src/stamp/modeling/data.py:819:51: F821 Undefined name `final_patients`
)

return patients


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