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update to KMC fork to eliminate patching and allow compilation on AMD w/SIMD #39

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update to KMC fork to eliminate patching and allow compilation on AMD w/SIMD #39

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854cd3d
update to KMC fork to eliminate patching and allow compilation on AMD…
ggraham Mar 30, 2024
50e298e
update KMC v
ggraham Jun 3, 2024
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15 changes: 6 additions & 9 deletions CMakeLists.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -184,17 +184,14 @@ endif()
message("Build system will fetch and install KMC3")
ExternalProject_Add(prj_kmc
DOWNLOAD_DIR ${CMAKE_SOURCE_DIR}/external
DOWNLOAD_COMMAND curl -k -L https://github.com/refresh-bio/KMC/archive/refs/tags/v3.2.1.tar.gz -o KMC-3.2.1.tar.gz &&
tar -xzf KMC-3.2.1.tar.gz &&
rm KMC-3.2.1.tar.gz
PATCH_COMMAND patch --strip 1 < ${CMAKE_SOURCE_DIR}/patches/kmc_patch.diff
SOURCE_DIR ${CMAKE_SOURCE_DIR}/external/KMC-3.2.1
DOWNLOAD_COMMAND curl -k -L https://github.com/ggraham/KMC/archive/refs/tags/v3.2.4e.tar.gz | tar -xz
SOURCE_DIR ${CMAKE_SOURCE_DIR}/external/KMC-3.2.4e
BUILD_IN_SOURCE TRUE
INSTALL_DIR ${CMAKE_SOURCE_DIR}/external/
CONFIGURE_COMMAND ""
BUILD_COMMAND make -j4 CC=${CMAKE_CXX_COMPILER} simde && make -j4 CC=${CMAKE_CXX_COMPILER} kmc
INSTALL_COMMAND cp bin/libkmc_core.a ${EXT_LIB} &&
cp include/kmc_runner.h ${EXT_INCLUDE}
CONFIGURE_COMMAND ./configure
BUILD_COMMAND make -j4
INSTALL_COMMAND cp libkmc_core.a ${EXT_LIB} &&
cp src/kmc_core/kmc_runner.h ${EXT_INCLUDE}
)

add_library(kmc STATIC IMPORTED)
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271 changes: 0 additions & 271 deletions patches/kmc-v3.2.1_cuttlefish-dev.diff
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