py-connectome-manipulator: update with new PyPI version.

bluebrain/repo-bluebrain/packages/py-connectome-manipulator/dependencies.patch

@@ -0,0 +1,44 @@
+diff --git a/setup.py b/setup.py
+index b01db74160e3a30fe28fda59c435bd8d78b2685f..9229b74e1429419c1c4dd8badf3bcec7105dd604 100644
+--- a/setup.py
++++ b/setup.py
+@@ -32,19 +32,19 @@
+     license="Apache-2",
+     install_requires=[
+         "bluepysnap==3.0.1",
+-        "numpy==1.24.3",
+-        "pandas==2.0.2",
+-        "progressbar==2.5",
+-        "pyarrow==14.0.1",
+-        "scipy==1.10.1",
+-        "scikit-learn==1.5.0",
+-        "voxcell==3.1.5",
+-        "tables==3.8.0",  # Optional dependency of pandas.DataFrame.to_hdf()
+-        "distributed==2023.6.0",  # Dask
+-        "dask-mpi==2022.4.0",
++        "numpy>=1.24.3",
++        "pandas>=1.5.3",
++        "progressbar>=2.5",
++        "pyarrow>=10.0.1",
++        "scipy>=1.10.1",
++        "scikit-learn>=1.3.2",
++        "voxcell>=3.1.5",
++        "tables>=3.8.0",  # Optional dependency of pandas.DataFrame.to_hdf()
++        "distributed>=2023.4.1",  # Dask
++        "dask-mpi>=2022.4.0",
+     ],
+     packages=find_packages(),
+-    python_requires="==3.10.*",
++    python_requires=">=3.10",
+     extras_require={"docs": ["sphinx", "sphinx-bluebrain-theme"]},
+     entry_points={
+         "console_scripts": [
+@@ -59,6 +59,8 @@
+         "Programming Language :: Python",
+         "Programming Language :: Python :: 3",
+         "Programming Language :: Python :: 3.10",
++        "Programming Language :: Python :: 3.11",
++        "Programming Language :: Python :: 3.12",
+         "Topic :: Scientific/Engineering",
+         "Topic :: Scientific/Engineering :: Bio-Informatics",
+     ],

bluebrain/repo-bluebrain/packages/py-connectome-manipulator/package.py

@@ -11,9 +11,9 @@ class PyConnectomeManipulator(PythonPackage):
     """Connectome generator tool."""
 
     homepage = "https://github.com/BlueBrain/connectome-manipulator"
-    git = "https://github.com/BlueBrain/connectome-manipulator.git"
+    pypi = "connectome-manipulator/connectome_manipulator-1.0.0.tar.gz"
 
-    version("0.0.10", tag="connectome-manipulator-v0.0.10")
+    version("1.0.1", sha256="6908e8a19681da9beda577d4f9e6f0fa518060f2a66b76a1ca0027b30478ac40") # FIXME
 
     variant(
         "convert",
@@ -24,13 +24,13 @@ class PyConnectomeManipulator(PythonPackage):
     depends_on("parquet-converters@0.8.0:", type="run", when="+convert")
 
     depends_on("py-bluepysnap@3.0.1:", type=("build", "run"))
-    depends_on("py-numpy", type=("build", "run"))
-    depends_on("py-pandas", type=("build", "run"))
-    depends_on("py-progressbar", type=("build", "run"))
-    depends_on("py-scipy", type=("build", "run"))
-    depends_on("py-scikit-learn", type=("build", "run"))
-    depends_on("py-voxcell", type=("build", "run"))
-    depends_on("py-pyarrow+parquet+dataset", type=("build", "run"))
-    depends_on("py-distributed", type=("build", "run"))
-    depends_on("py-dask-mpi", type=("build", "run"))
-    depends_on("py-tables", type=("build", "run"))
+    depends_on("py-numpy@1.24.3:", type=("build", "run"))
+    depends_on("py-pandas@1.5.3:", type=("build", "run"))
+    depends_on("py-progressbar@2.5:", type=("build", "run"))
+    depends_on("py-scipy@1.10.1:", type=("build", "run"))
+    depends_on("py-scikit-learn@1.3.2:", type=("build", "run"))
+    depends_on("py-voxcell@3.1.5:", type=("build", "run"))
+    depends_on("py-pyarrow+parquet+dataset@10.0.1:", type=("build", "run"))
+    depends_on("py-distributed@2023.4.1:", type=("build", "run"))
+    depends_on("py-dask-mpi@2022.4.0:", type=("build", "run"))
+    depends_on("py-tables@3.8.0:", type=("build", "run"))