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martin-raden merged 1 commit into from
Jan 17, 2025
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Update README.md #222

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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -1497,7 +1497,7 @@ It holds

BUT: the seed-extension strategy in `--model=X` does not allow for correct `Zall` computation in exact mfe prediction mode (`--mode=M`).

- **BEWARE in seed-extension models:** `Zall(--mode=H --model=X)` might be LARGER than exact mode `Zall(--mode=M --model=X)`, since in the latter **not all structures are counted to avoid duplicated counts!**
- **BEWARE in seed-extension models:** `Eall(--mode=M --model=X)` might be higher than `E(--mode=M --model=X)`, since in this mode **`Zall` does not consider all structures to avoid duplicated counts!** Thus, avoid `Eall` or `Zall` output in this mode!

Thus, most accurate results are computed using
```
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