Yilinzhao #7
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Yilinzhao #7
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this version works with LIMS references changed "transferAbund" to "true" under "if useUniformWeights" output the same probes each run
The human_MTG sequential codebook revealed a bug that the allOligos were not collected correctly with the original version. I rewrote the logic to collect allOligos.
1. Check whether gene and ids match with each other in the reference, send a warning if not 2. allOligos file is written in a different way to avoid empty cells when there are mismatched gene+ids in the codebook 3. change the selection process of probes to stop picking duplicated probes for genes with multiple transcripts
Tested. We can keep the ensemble and NCBI choice as long as we remove the NCBI _ to , modification.
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This is to add an output csv with genes and number of probes designed per gene