Update api_build and pack_build #84
Description
Not time-critical, but there are 115 NA values in the getStudies(cbio, buildReport = TRUE) api_build and pack_build columns. I'm guessing these are studies added to cBioPortal since the last time the scripts in inst/scripts/buildStudies were run so that they haven't been tested? It would be good to:
- update these build columns
- add a
build_check_datecolumn to thegetStudies(cbio, buildReport = TRUE)output, providing the date when these builds were checked - document how to update the build columns (in README.Rmd?)
- perhaps add it to @jwokaty's pre-release TODO list along with bugsigdb-related data updates
suppressPackageStartupMessages({
library(cBioPortalData)
})
cbio <- cBioPortal()
studies <- getStudies(cbio, buildReport = TRUE)
summary(studies$api_build)
#> Mode FALSE TRUE NA's
#> logical 40 339 115
summary(studies$pack_build)
#> Mode FALSE TRUE NA's
#> logical 27 352 115
devtools::session_info()
#> ─ Session info ───────────────────────────────────────────────────────────────
#> setting value
#> version R version 4.5.0 (2025-04-11)
#> os macOS Sequoia 15.5
#> system aarch64, darwin20
#> ui X11
#> language (EN)
#> collate en_US.UTF-8
#> ctype en_US.UTF-8
#> tz Europe/Rome
#> date 2025-07-02
#> pandoc 3.4 @ /Applications/RStudio.app/Contents/Resources/app/quarto/bin/tools/aarch64/ (via rmarkdown)
#> quarto 1.7.30 @ /usr/local/bin/quarto
#>
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#> ──────────────────────────────────────────────────────────────────────────────Created on 2025-07-02 with reprex v2.1.1