From 61055f71cc18dda7018bcfee195f5559f61c9a76 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Cl=C3=A9ment=20Robert?= <cr52@protonmail.com>
Date: Fri, 15 Aug 2025 11:08:44 +0200
Subject: [PATCH 1/2] TST: use `coverage` directly, ditch `pytest-cov`

---
 .codecov.yml             | 10 ----------
 .github/workflows/ci.yml |  6 ++++--
 Makefile                 |  3 ++-
 pyproject.toml           |  2 +-
 4 files changed, 7 insertions(+), 14 deletions(-)
 delete mode 100644 .codecov.yml

diff --git a/.codecov.yml b/.codecov.yml
deleted file mode 100644
index 6d478d53..00000000
--- a/.codecov.yml
+++ /dev/null
@@ -1,10 +0,0 @@
-coverage:
-  status:
-    patch: false
-  range: 50..70
-  round: nearest
-  precision: 2
-
-ignore:
-  - tests/*
-  - src/vip_hci/vip_ds9.py
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index d970a930..47b4916e 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -52,7 +52,8 @@ jobs:
 #        pre-commit run --files src/**/*.py
     - name: Test with pytest
       run: |
-        pytest tests/pre_3_10 --cov=src --cov-report=xml --splits 3 --group ${{ matrix.group }}
+        coverage run --source src -m pytest tests/pre_3_10 --splits 3 --group ${{ matrix.group }}
+        coverage xml
     - name: Upload coverage to Codecov
       uses: codecov/codecov-action@v3
 
@@ -87,6 +88,7 @@ jobs:
 #        pre-commit run --files src/vip_hci/objects/*.py
     - name: Test with pytest
       run: |
-        pytest tests/post_3_10 --cov=src/vpi_hci/objects/ --cov-report=xml
+        coverage run --source=src/vip_hci/objects/ -m pytest tests/post_3_10
+        coverage xml
     - name: Upload coverage to Codecov
       uses: codecov/codecov-action@v3
diff --git a/Makefile b/Makefile
index 8f412811..c93fba37 100644
--- a/Makefile
+++ b/Makefile
@@ -49,7 +49,8 @@ test:
 	pre-commit install-hooks
 	pre-commit install
 	pre-commit run --files src/**/*.py
-	pytest --cov=src --cov-report=xml
+	coverate run -m pytest
+	coverage xml
 	rm confi_hist.pdf
 	rm confi_hist_gaussfit.pdf
 	rm confidence.txt
diff --git a/pyproject.toml b/pyproject.toml
index 4ffc5dd2..9bb55c76 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -47,6 +47,7 @@ dependencies = [
 
 [dependency-groups]
 dev = [
+    "coverage>=7.10.0",
     "build",
     "twine",
     "opencv-python",
@@ -55,7 +56,6 @@ dev = [
     "myst-parser",
     "pandoc",
     "pytest",
-    "pytest-cov ~=2.6.0",
     "pytest-split",
     "flake8",
     "flake8-bandit",

From e6d4e09fd301946e945bde1d17b75f1184c142e1 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Cl=C3=A9ment=20Robert?= <cr52@protonmail.com>
Date: Fri, 15 Aug 2025 13:07:27 +0200
Subject: [PATCH 2/2] TST: install package in editable mode to simplify
 coverage measurements

---
 .github/workflows/ci.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 47b4916e..ccf4b1a4 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -37,7 +37,7 @@ jobs:
     - name: Install dependencies
       run: |
         python -m pip install --upgrade pip
-        pip install . --group dev
+        pip install --editable . --group dev
 #    Uncomment below when ready to deal with a lot of PEP8 formatting changes
 #    - name: Verify files with pre-commit
 #      run: |
@@ -74,7 +74,7 @@ jobs:
     - name: Install dependencies
       run: |
         python -m pip install --upgrade pip
-        pip install . --group dev
+        pip install --editable . --group dev
 #    - name: Verify files with pre-commit
 #      run: |
 #        # Setup pre-commit hooks