Extend phenopacket YAML bootstrapping

[holtgrewe]

Is your feature request related to a problem? Please describe.
#70 adds support for bootstrapping phenopackets YAML files. However, the handling of quality control files and read alignment files is still unimplemented.

Describe the solution you'd like
Add support for automatically detecting quality control file types and support for interpreting BAM files.

Describe alternatives you've considered
N/A

Additional context

• Implement support for new-style imports #70