From 6f6270f6664767d90e9afad9798b99f0e127a12f Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Bj=C3=B6rn=20Gr=C3=BCning?= Date: Tue, 29 Oct 2019 21:10:31 +0100 Subject: [PATCH] Add PGP pilot datasets --- pgp_pilot_library.yaml | 666 +++++++++++++++++++++++++++++++++++++++++ 1 file changed, 666 insertions(+) create mode 100644 pgp_pilot_library.yaml diff --git a/pgp_pilot_library.yaml b/pgp_pilot_library.yaml new file mode 100644 index 0000000..812a601 --- /dev/null +++ b/pgp_pilot_library.yaml @@ -0,0 +1,666 @@ +--- +destination: + type: library + name: 'PGP-UK Open Access Data' + description: 'Open Access Genomic, Transcriptomic and Methylomic Data from the Personal + Genome Project UK. DOI: 10.1186/s12920-018-0423-1' +items: +- name: Genetic Data (WGS) + description: Open access WGS data from the PGP-UK Project + items: + - url: ftp.sra.ebi.ac.uk/vol1/fastq/ERR172/004/ERR1726424/ERR1726424_1.fastq.gz + src: url + ext: fastqsanger.gz + info: 'WGS Fastq (_1) data from PGP-UK Participant uk35C650: See https://personalgenomes.org.uk/data?hex_id=uk35C650' + + - url: ftp.sra.ebi.ac.uk/vol1/fastq/ERR172/004/ERR1726424/ERR1726424_2.fastq.gz + src: url + ext: fastqsanger.gz + info: 'WGS Fastq (_2) data from PGP-UK Participant uk35C650: See https://personalgenomes.org.uk/data?hex_id=uk35C650' + + - url: ftp.sra.ebi.ac.uk/vol1/ERZ389/ERZ389530/FR07961001.pass.recode.vcf.gz + src: url + ext: vcf + info: 'VCF data from PGP-UK Participant uk35C650: See https://personalgenomes.org.uk/data?hex_id=uk35C650' + + - url: https://my.personalgenomes.org.uk/user_file/download/166 + src: url + ext: vcf + info: '23andMe data from PGP-UK Participant uk35C650: See https://personalgenomes.org.uk/data?hex_id=uk35C650' + + - url: ftp.sra.ebi.ac.uk/vol1/fastq/ERR172/005/ERR1726425/ERR1726425_1.fastq.gz + src: url + ext: fastqsanger.gz + info: 'WGS Fastq (_1) data from PGP-UK Participant uk2E2AAE: See https://personalgenomes.org.uk/data?hex_id=uk2E2AAE' + + - url: ftp.sra.ebi.ac.uk/vol1/fastq/ERR172/005/ERR1726425/ERR1726425_2.fastq.gz + src: url + ext: fastqsanger.gz + info: 'WGS Fastq (_2) data from PGP-UK Participant uk2E2AAE: See https://personalgenomes.org.uk/data?hex_id=uk2E2AAE' + + - url: ftp.sra.ebi.ac.uk/vol1/ERZ389/ERZ389528/FR07961002.pass.recode.vcf.gz + src: url + ext: vcf + info: 'VCF data from PGP-UK Participant uk2E2AAE: See https://personalgenomes.org.uk/data?hex_id=uk2E2AAE' + + - url: ftp.sra.ebi.ac.uk/vol1/fastq/ERR172/006/ERR1726426/ERR1726426_1.fastq.gz + src: url + ext: fastqsanger.gz + info: 'WGS Fastq (_1) data from PGP-UK Participant uk2DF242: See https://personalgenomes.org.uk/data?hex_id=uk2DF242' + + - url: ftp.sra.ebi.ac.uk/vol1/fastq/ERR172/006/ERR1726426/ERR1726426_2.fastq.gz + src: url + ext: fastqsanger.gz + info: 'WGS Fastq (_2) data from PGP-UK Participant uk2DF242: See https://personalgenomes.org.uk/data?hex_id=uk2DF242' + + - 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