From c8551396223916515ee633861fc73356832c0b86 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Philippe=20H=C3=B6ij?= Date: Tue, 6 Jan 2026 17:17:25 +0100 Subject: [PATCH 01/11] Add prefix management --- terminusdb_client/client/Client.py | 181 +++++++++++++++++- .../test_prefix_management.py | 135 +++++++++++++ 2 files changed, 315 insertions(+), 1 deletion(-) create mode 100644 terminusdb_client/tests/integration_tests/test_prefix_management.py diff --git a/terminusdb_client/client/Client.py b/terminusdb_client/client/Client.py index 1b7ea8d6..50cad46c 100644 --- a/terminusdb_client/client/Client.py +++ b/terminusdb_client/client/Client.py @@ -670,7 +670,177 @@ def _get_prefixes(self): headers=self._default_headers, auth=self._auth(), ) - return json.loads(_finish_response(result)) + result.raise_for_status() + return result.json() + + def get_prefix(self, prefix_name: str) -> str: + """Get a single prefix IRI by name. + + Parameters + ---------- + prefix_name : str + The prefix name to retrieve. + + Returns + ------- + str + The IRI (namespace URL) this prefix expands to. + + Raises + ------ + DatabaseError + If the prefix does not exist (404) or other API error. + + Examples + -------- + >>> client.get_prefix("schema") + 'http://schema.org/' + """ + self._check_connection() + result = self._session.get( + self._prefix_url(prefix_name), + headers=self._default_headers, + auth=self._auth(), + ) + result.raise_for_status() + return result.json()["api:prefix_uri"] + + def add_prefix(self, prefix_name: str, uri: str) -> dict: + """Add a new prefix mapping. + + Parameters + ---------- + prefix_name : str + The prefix name to create (must follow NCName rules). + uri : str + The IRI (namespace URL) this prefix expands to. + + Returns + ------- + dict + API response with status and details. + + Raises + ------ + DatabaseError + If prefix already exists or validation fails. + + Examples + -------- + >>> client.add_prefix("ex", "http://example.org/") + {'@type': 'api:PrefixAddResponse', 'api:status': 'api:success', ...} + """ + self._check_connection() + result = self._session.post( + self._prefix_url(prefix_name), + json={"uri": uri}, + headers=self._default_headers, + auth=self._auth(), + ) + result.raise_for_status() + return result.json() + + def update_prefix(self, prefix_name: str, uri: str) -> dict: + """Update an existing prefix mapping. + + Parameters + ---------- + prefix_name : str + The prefix name to update. + uri : str + The new IRI for this prefix. + + Returns + ------- + dict + API response with status and details. + + Raises + ------ + DatabaseError + If prefix does not exist (404) or validation fails. + + Examples + -------- + >>> client.update_prefix("ex", "http://example.com/") + {'@type': 'api:PrefixUpdateResponse', 'api:status': 'api:success', ...} + """ + self._check_connection() + result = self._session.put( + self._prefix_url(prefix_name), + json={"uri": uri}, + headers=self._default_headers, + auth=self._auth(), + ) + result.raise_for_status() + return result.json() + + def upsert_prefix(self, prefix_name: str, uri: str) -> dict: + """Create or update a prefix mapping (upsert). + + Parameters + ---------- + prefix_name : str + The prefix name. + uri : str + The IRI for this prefix. + + Returns + ------- + dict + API response with status and details. + + Raises + ------ + DatabaseError + If validation fails. + + Examples + -------- + >>> client.upsert_prefix("ex", "http://example.org/") + {'@type': 'api:PrefixUpdateResponse', 'api:status': 'api:success', ...} + """ + self._check_connection() + result = self._session.put( + self._prefix_url(prefix_name) + "?create=true", + json={"uri": uri}, + headers=self._default_headers, + auth=self._auth(), + ) + result.raise_for_status() + return result.json() + + def delete_prefix(self, prefix_name: str) -> dict: + """Delete a prefix mapping. + + Parameters + ---------- + prefix_name : str + The prefix name to delete. + + Returns + ------- + dict + API response with status. + + Raises + ------ + DatabaseError + If prefix does not exist (404) or is reserved. + + Examples + -------- + >>> client.delete_prefix("ex") + {'@type': 'api:PrefixDeleteResponse', 'api:status': 'api:success', ...} + """ + self._check_connection() + result = self._session.delete( + self._prefix_url(prefix_name), + headers=self._default_headers, + auth=self._auth(), + ) + result.raise_for_status() + return result.json() def create_database( self, @@ -3086,3 +3256,12 @@ def _push_url(self): def _db_url(self): return self._db_base("db") + + def _prefix_url(self, prefix_name: Optional[str] = None): + """Get URL for prefix operations""" + base = self._db_base("prefix") + if self._db == "_system": + return base if prefix_name is None else f"{base}/{urlparse.quote(prefix_name)}" + # For regular databases, include repo and branch + base = self._branch_base("prefix") + return base if prefix_name is None else f"{base}/{urlparse.quote(prefix_name)}" diff --git a/terminusdb_client/tests/integration_tests/test_prefix_management.py b/terminusdb_client/tests/integration_tests/test_prefix_management.py new file mode 100644 index 00000000..ba577a21 --- /dev/null +++ b/terminusdb_client/tests/integration_tests/test_prefix_management.py @@ -0,0 +1,135 @@ +"""Integration tests for prefix management operations.""" +import pytest +from terminusdb_client.client import Client + + +@pytest.fixture +def client(): + """Create a test client connected to TerminusDB.""" + client = Client("http://127.0.0.1:6363") + client.connect(user="admin", key="root", team="admin") + return client + + +@pytest.fixture +def test_db(client): + """Create and cleanup a test database.""" + import time + db_name = f"test_prefix_{int(time.time() * 1000)}" + + client.create_database(db_name, label="Test Prefix DB", description="Database for testing prefix operations") + client.connect(db=db_name) + + yield db_name + + # Cleanup + try: + client.delete_database(db_name) + except Exception: + pass + + +class TestPrefixManagement: + """Test suite for prefix management operations.""" + + def test_add_prefix_success(self, client, test_db): + """Test adding a new prefix successfully.""" + result = client.add_prefix("ex", "http://example.org/") + assert result["api:status"] == "api:success" + assert result["api:prefix_name"] == "ex" + assert result["api:prefix_uri"] == "http://example.org/" + + def test_add_prefix_duplicate(self, client, test_db): + """Test that adding duplicate prefix fails.""" + client.add_prefix("ex", "http://example.org/") + + with pytest.raises(Exception) as exc_info: + client.add_prefix("ex", "http://example.com/") + + # Should get 400 error with PrefixAlreadyExists + assert exc_info.value.response.status_code == 400 + + def test_add_prefix_invalid_iri(self, client, test_db): + """Test that invalid IRI is rejected.""" + with pytest.raises(Exception) as exc_info: + client.add_prefix("ex", "not-a-valid-uri") + + assert exc_info.value.response.status_code == 400 + + def test_add_prefix_reserved(self, client, test_db): + """Test that reserved prefix names are rejected.""" + with pytest.raises(Exception) as exc_info: + client.add_prefix("@custom", "http://example.org/") + + assert exc_info.value.response.status_code == 400 + + def test_get_prefix_success(self, client, test_db): + """Test retrieving an existing prefix.""" + client.add_prefix("ex", "http://example.org/") + uri = client.get_prefix("ex") + assert uri == "http://example.org/" + + def test_get_prefix_not_found(self, client, test_db): + """Test that getting non-existent prefix fails.""" + with pytest.raises(Exception) as exc_info: + client.get_prefix("nonexistent") + + assert exc_info.value.response.status_code == 404 + + def test_update_prefix_success(self, client, test_db): + """Test updating an existing prefix.""" + client.add_prefix("ex", "http://example.org/") + result = client.update_prefix("ex", "http://example.com/") + + assert result["api:status"] == "api:success" + assert result["api:prefix_uri"] == "http://example.com/" + + # Verify the update + uri = client.get_prefix("ex") + assert uri == "http://example.com/" + + def test_update_prefix_not_found(self, client, test_db): + """Test that updating non-existent prefix fails.""" + with pytest.raises(Exception) as exc_info: + client.update_prefix("nonexistent", "http://example.org/") + + assert exc_info.value.response.status_code == 404 + + def test_upsert_prefix_create(self, client, test_db): + """Test upsert creates prefix if it doesn't exist.""" + result = client.upsert_prefix("ex", "http://example.org/") + assert result["api:status"] == "api:success" + assert result["api:prefix_uri"] == "http://example.org/" + + def test_upsert_prefix_update(self, client, test_db): + """Test upsert updates prefix if it already exists.""" + client.add_prefix("ex", "http://example.org/") + result = client.upsert_prefix("ex", "http://example.com/") + + assert result["api:status"] == "api:success" + assert result["api:prefix_uri"] == "http://example.com/" + + def test_delete_prefix_success(self, client, test_db): + """Test deleting an existing prefix.""" + client.add_prefix("ex", "http://example.org/") + result = client.delete_prefix("ex") + assert result["api:status"] == "api:success" + + # Verify deletion + with pytest.raises(Exception) as exc_info: + client.get_prefix("ex") + assert exc_info.value.response.status_code == 404 + + def test_delete_prefix_not_found(self, client, test_db): + """Test that deleting non-existent prefix fails.""" + with pytest.raises(Exception) as exc_info: + client.delete_prefix("nonexistent") + + assert exc_info.value.response.status_code == 404 + + def test_delete_prefix_reserved(self, client, test_db): + """Test that deleting reserved prefix fails.""" + with pytest.raises(Exception) as exc_info: + client.delete_prefix("@base") + + assert exc_info.value.response.status_code == 400 From d82890590332e33895c9b763ca88037c9ac9dfc6 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Philippe=20H=C3=B6ij?= Date: Wed, 7 Jan 2026 08:17:29 +0100 Subject: [PATCH 02/11] Make it easier to contribute --- .gitignore | 7 +- CONTRIBUTING.md | 136 +- poetry.lock | 2104 ++++++++++++++++++++---------- pyproject.toml | 1 + terminusdb_client/scripts/dev.py | 350 +++++ 5 files changed, 1893 insertions(+), 705 deletions(-) create mode 100644 terminusdb_client/scripts/dev.py diff --git a/.gitignore b/.gitignore index b93b4039..54910b8e 100755 --- a/.gitignore +++ b/.gitignore @@ -2,9 +2,14 @@ /requirements-dev.txt /requirements.txt -# converage file +# Generated documentation JSON +docs.json + +# coverage file cov.xml +.venv + .mypy_cache/ .pytest_cache/ diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index 745d3adf..9ffe6f08 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -2,51 +2,143 @@ Thanks for interested to contribute to TerminusDB Client, to get started, fork this repo and follow the [instruction setting up dev environment](#setting-up-dev-environment-). If you don't have idea where to start, you can look for [`good first issue`](https://github.com/terminusdb/terminusdb-client-python/contribute) or [`help wanted`](https://github.com/terminusdb/terminusdb-client-python/issues?q=is:open+is:issue+label:"help+wanted") label at issues. All pull request should follow the [Pull Request Format Guideline](#pull-request-format-guideline-) and pull request (PR) that involving coding should come with [tests](#writing-tests-and-testing-) and [documentations](#writing-documentation-). -## Setting up dev environment πŸ’» +## Quick Start (Python + Poetry) πŸš€ + +If you have Python 3.9+ installed, here's the fastest way to get started: + +```bash +# 1. Clone the repository +git clone https://github.com/terminusdb/terminusdb-client-python.git +cd terminusdb-client-python + +# 2. Create and activate a virtual environment with Python 3.9+ +python3.9 -m venv .venv # or python3.10, python3.11, python3.12 +source .venv/bin/activate # On Windows: .venv\Scripts\activate + +# 3. Install Poetry (if not already installed) +pip install poetry + +# 4. Install dependencies and set up development environment +poetry install --with dev + +# 5. Install pre-commit hooks (optional, requires Python 3.10+) +# If you have Python 3.10+, you can install pre-commit: +# poetry add --group dev pre-commit && poetry run pre-commit install + +# 6. Install the package in editable mode +poetry run dev install-dev + +# 7. Run tests to verify everything works +poetry run dev test + +# 8. Get help with available commands +poetry run dev --help +``` + +**Important**: This project requires Python 3.9 or higher. If you're using Python 3.8, please upgrade to Python 3.9+ before proceeding. -Make sure you have Python>=3.9 installed. We use [pipenv](https://pipenv-fork.readthedocs.io/en/latest/) for dev environment, to install pipenv: +That's it! You're now ready to start contributing. See [Poetry Scripts Reference](#poetry-scripts-reference-) for all available commands. -`pip3 install pipenv --upgrade` +## Setting up dev environment πŸ’» -[Fork and clone](https://help.github.com/en/github/getting-started-with-github/fork-a-repo) this repo, then in your local repo: +Make sure you have Python>=3.9 installed. We use [Poetry](https://python-poetry.org/) for dependency management. -`pipenv install --dev --pre` or `make init` +### Using Poetry (Recommended) -To β€œeditable” install the local Terminus Client Python: +1. [Fork and clone](https://help.github.com/en/github/getting-started-with-github/fork-a-repo) this repo -`pip3 install -e .` +2. Create and activate a virtual environment: + ```bash + python3 -m venv .venv + source .venv/bin/activate # On Windows: .venv\Scripts\activate + ``` -**to be able to run integration tests, local installation of docker is required** +3. Install Poetry and dependencies: + ```bash + pip install poetry + poetry install --with dev + ``` -We use [shed](https://pypi.org/project/shed/) to lint our code. Although you can do it manually by running `shed`, we highly recommend setting up the pre-commit hook to do the linting automatically. +4. Install the package in editable mode: + ```bash + poetry run dev install-dev + ``` -To install the pre-commit hook: +**To run integration tests, Docker must be installed locally.** -`pre-commit install` +We use [shed](https://pypi.org/project/shed/) to lint our code. You can run it manually with `poetry run dev lint`, or set up a pre-commit hook (requires Python 3.10+): + +```bash +poetry add --group dev pre-commit +poetry run pre-commit install +``` ## Writing tests and testing βœ… -We are using [pytest](https://docs.pytest.org/en/latest/) for testing. All tests are stored in `/tests` +We are using [pytest](https://docs.pytest.org/en/latest/) for testing. All tests are stored in `terminusdb_client/tests/`. -We also use tox to run tests in a virtual environment, we recommend running `tox` for the first time before you make any changes. This is to initialize the tox environments (or do it separately by `tox -e deps`) and make sure all tests pass initially. +### Using Poetry Scripts (Recommended) -To run the unittests without integration tests: +```bash +# Format your code +poetry run dev format -`pytest terminusdb_client/tests/ --ignore=terminusdb_client/tests/integration_tests/` +# Run linting (read-only, just checks) +poetry run dev lint -To run all tests including integration tests: +# Run flake8 only +poetry run dev flake8 -`tox -e test` +# Fix linting issues automatically +poetry run dev lint-fix -To run all checks and auto formatting: +# Run all tests +poetry run dev test-all -`tox -e check` +# Prepare your PR (runs format, lint, and all tests) +poetry run dev pr +``` + +### Using tox (Alternative) + +You can also use tox to run tests in an isolated environment: -To run all tests and checks: +```bash +# Run all tests +tox -e test -`tox` +# Run all checks and auto formatting +tox -e check + +# Run everything +tox +``` -**please make sure `tox` passes before making PR** +**Please make sure all tests pass before making a PR.** + +## Poetry Scripts Reference πŸ“‹ + +The project includes a `dev` script that provides the following commands: + +| Command | Description | +|--------|-------------| +| `poetry run dev init-dev` | Initialize development environment | +| `poetry run dev install-dev` | Install package in editable mode | +| `poetry run dev format` | Format code with shed | +| `poetry run dev lint` | Run linting checks (read-only) | +| `poetry run dev lint-fix` | Run linting and fix issues automatically | +| `poetry run dev flake8` | Run flake8 linting only | +| `poetry run dev check` | Run all static analysis checks | +| `poetry run dev test` | Run unit tests | +| `poetry run dev test-unit` | Run unit tests with coverage | +| `poetry run dev test-integration` | Run integration tests | +| `poetry run dev test-all` | Run all tests | +| `poetry run dev docs` | Build documentation | +| `poetry run dev tox` | Run tox for isolated testing | +| `poetry run dev clean` | Clean build artifacts | +| `poetry run dev pr` | Run all PR preparation checks | + +Run `poetry run dev --help` to see all available commands. ## Writing Documentation πŸ“– diff --git a/poetry.lock b/poetry.lock index 105b8d04..dfda58e6 100644 --- a/poetry.lock +++ b/poetry.lock @@ -2,74 +2,80 @@ [[package]] name = "alabaster" -version = "0.7.13" -description = "A configurable sidebar-enabled Sphinx theme" +version = "0.7.16" +description = "A light, configurable Sphinx theme" optional = false -python-versions = ">=3.6" +python-versions = ">=3.9" groups = ["main"] +markers = "python_version < \"3.11\"" files = [ - {file = "alabaster-0.7.13-py3-none-any.whl", hash = "sha256:1ee19aca801bbabb5ba3f5f258e4422dfa86f82f3e9cefb0859b283cdd7f62a3"}, - {file = "alabaster-0.7.13.tar.gz", hash = "sha256:a27a4a084d5e690e16e01e03ad2b2e552c61a65469419b907243193de1a84ae2"}, + {file = "alabaster-0.7.16-py3-none-any.whl", hash = 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{file = "zipp-3.19.1-py3-none-any.whl", hash = "sha256:2828e64edb5386ea6a52e7ba7cdb17bb30a73a858f5eb6eb93d8d36f5ea26091"}, - {file = "zipp-3.19.1.tar.gz", hash = "sha256:35427f6d5594f4acf82d25541438348c26736fa9b3afa2754bcd63cdb99d8e8f"}, + {file = "zipp-3.23.0-py3-none-any.whl", hash = "sha256:071652d6115ed432f5ce1d34c336c0adfd6a884660d1e9712a256d3d3bd4b14e"}, + {file = "zipp-3.23.0.tar.gz", hash = "sha256:a07157588a12518c9d4034df3fbbee09c814741a33ff63c05fa29d26a2404166"}, ] [package.extras] +check = ["pytest-checkdocs (>=2.4)", "pytest-ruff (>=0.2.1) ; sys_platform != \"cygwin\""] +cover = ["pytest-cov"] doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"] -test = ["big-O", "jaraco.functools", "jaraco.itertools", "jaraco.test", "more-itertools", "pytest (>=6,!=8.1.*)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy", "pytest-ruff (>=0.2.1)"] +enabler = ["pytest-enabler (>=2.2)"] +test = ["big-O", "jaraco.functools", "jaraco.itertools", "jaraco.test", "more_itertools", "pytest (>=6,!=8.1.*)", "pytest-ignore-flaky"] +type = ["pytest-mypy"] [metadata] lock-version = "2.1" -python-versions = ">=3.8.0,<3.12" +python-versions = ">=3.9.0,<3.13" content-hash = "0cef78a9faccb971755e5608baa4b95edbec159bfe68d0123cc820beae74b16d" diff --git a/pyproject.toml b/pyproject.toml index dc3cdad9..6fa1ecd3 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -26,6 +26,7 @@ flake8 = "*" [tool.poetry.scripts] tdbpy = "terminusdb_client.scripts.scripts:tdbpy" +dev = "terminusdb_client.scripts.dev:main" [build-system] requires = ["poetry-core>=1.0.0"] diff --git a/terminusdb_client/scripts/dev.py b/terminusdb_client/scripts/dev.py new file mode 100644 index 00000000..c319f68c --- /dev/null +++ b/terminusdb_client/scripts/dev.py @@ -0,0 +1,350 @@ +#!/usr/bin/env python3 +""" +Development scripts for TerminusDB Python Client. +These scripts provide centralized development commands through Poetry. +""" + +import os +import shutil +import subprocess +import sys +from pathlib import Path + +# Constants for pytest arguments +PYTEST_TB_SHORT = "--tb=short" +PYTEST_COV = "--cov=terminusdb_client" +PYTEST_COV_TERM = "--cov-report=term-missing" +PYTEST_COV_XML = "--cov-report=xml:cov.xml" + + +def run_command(cmd, cwd=None, check=True): + """Run a shell command and return the result.""" + print(f"Running: {' '.join(cmd)}") + return subprocess.run(cmd, cwd=cwd, check=check) + + +def init(): + """Initialize development environment.""" + print("Initializing development environment...") + + # Install/upgrade pip + run_command([sys.executable, "-m", "pip", "install", "--upgrade", "pip"]) + + # Install Poetry if not present + try: + subprocess.run(["poetry", "--version"], check=True, capture_output=True) + except subprocess.CalledProcessError: + run_command([sys.executable, "-m", "pip", "install", "poetry"]) + + # Install dependencies + run_command(["poetry", "install", "--with", "dev"]) + + # Install pre-commit hooks + run_command(["poetry", "run", "pre-commit", "install"]) + + print("\n Development environment initialized successfully!") + print(" Use 'poetry run ' to run development commands.") + print( + " Available commands: init-dev, install-dev, format, lint, check, test, test-unit, test-integration, test-all, docs, clean, pr" + ) + + +def install(): + """Install package in editable mode.""" + print("Installing package in editable mode...") + run_command([sys.executable, "-m", "pip", "install", "-e", "."]) + + +def format(): + """Format code with shed.""" + print("Formatting code...") + run_command(["poetry", "run", "shed"]) + + +def lint(): + """Run linting checks (read-only).""" + print("Running linting checks...") + + # Check code formatting with shed + print("Checking code formatting with shed...") + temp_dir = Path("/tmp/terminusdb-lint-check") + temp_dir.mkdir(exist_ok=True) + + try: + # Copy code to temp directory + src_dir = Path("terminusdb_client") + if src_dir.exists(): + shutil.copytree(src_dir, temp_dir / src_dir.name, dirs_exist_ok=True) + + # Initialize git repo in temp directory if not exists + subprocess.run(["git", "init"], cwd=temp_dir, capture_output=True) + subprocess.run(["git", "config", "user.email", "test@example.com"], cwd=temp_dir, capture_output=True) + subprocess.run(["git", "config", "user.name", "Test User"], cwd=temp_dir, capture_output=True) + subprocess.run(["git", "add", "."], cwd=temp_dir, capture_output=True) + subprocess.run(["git", "commit", "-m", "initial"], cwd=temp_dir, capture_output=True) + + # Run shed in temp directory + subprocess.run( + ["poetry", "run", "shed"], + cwd=temp_dir, + capture_output=True + ) + + # Check if any files were modified + git_result = subprocess.run( + ["git", "status", "--porcelain"], + cwd=temp_dir, + capture_output=True, + text=True + ) + + if git_result.returncode != 0 or git_result.stdout.strip(): + print("❌ Code formatting issues found. Run 'poetry run dev lint-fix' to fix.") + sys.exit(1) + else: + print("βœ… Code formatting is correct.") + finally: + # Clean up + shutil.rmtree(temp_dir, ignore_errors=True) + + # Run flake8 + print("Running flake8...") + run_command(["poetry", "run", "flake8", "terminusdb_client"]) + + +def flake8(): + """Run flake8 linting only.""" + print("Running flake8...") + run_command(["poetry", "run", "flake8", "terminusdb_client"]) + + +def lint_fix(): + """Run linting and fix issues automatically.""" + print("Running linting fixes...") + + # Format code with shed + print("Fixing code formatting with shed...") + run_command(["poetry", "run", "shed"]) + + print("βœ… Linting fixes completed!") + print("Note: Some issues (like flake8 violations) may need manual fixes.") + + +def check(): + """Run all static analysis checks.""" + print("Running static analysis checks...") + lint() + + +def test(): + """Run unit tests (alias for test-unit).""" + test_unit() + + +def test_unit(): + """Run unit tests only.""" + print("Running unit tests...") + run_command( + [ + "poetry", + "run", + "python", + "-m", + "pytest", + "terminusdb_client/tests/", + "--ignore=terminusdb_client/tests/integration_tests/", + PYTEST_TB_SHORT, + PYTEST_COV, + PYTEST_COV_TERM, + ] + ) + + +def test_integration(): + """Run integration tests (requires Docker).""" + print("Running integration tests...") + run_command( + [ + "poetry", + "run", + "python", + "-m", + "pytest", + "terminusdb_client/tests/integration_tests/", + PYTEST_TB_SHORT, + PYTEST_COV, + PYTEST_COV_TERM, + ] + ) + + +def test_all(): + """Run all tests (unit + integration).""" + print("Running all tests...") + run_command( + [ + "poetry", + "run", + "python", + "-m", + "pytest", + "terminusdb_client/tests/", + PYTEST_TB_SHORT, + PYTEST_COV, + PYTEST_COV_TERM, + PYTEST_COV_XML, + ] + ) + + +def docs(): + """Build documentation.""" + print("Building documentation...") + os.chdir("docs") + try: + run_command(["make", "html"]) + finally: + os.chdir("..") + + +def tox(): + """Run tox for isolated testing.""" + print("Running tox...") + run_command(["poetry", "run", "tox"]) + + +def clean(): + """Clean build artifacts.""" + print("Cleaning build artifacts...") + + # Directories to remove + dirs_to_clean = [ + ".coverage", + ".pytest_cache", + ".ruff_cache", + ".tox", + "build/", + "dist/", + "*.egg-info/", + ] + + for pattern in dirs_to_clean: + for path in Path(".").glob(pattern): + if path.is_dir(): + shutil.rmtree(path) + print(f"Removed directory: {path}") + elif path.is_file(): + path.unlink() + print(f"Removed file: {path}") + + # Remove __pycache__ directories + for pycache in Path(".").rglob("__pycache__"): + shutil.rmtree(pycache) + + # Remove .pyc files + for pyc in Path(".").rglob("*.pyc"): + pyc.unlink() + + +def pr(): + """Run all PR preparation checks.""" + print("Running PR preparation checks...") + + # 1. Clean + clean() + + # 2. Format + format() + + # 3. Lint + lint() + + # 4. Run all tests + test_all() + + print("\nAll PR preparation checks completed successfully!") + print("\nSummary of checks performed:") + print(" βœ“ Code formatted with shed") + print(" βœ“ Linting passed (flake8, shed check)") + print(" βœ“ All tests passed (unit + integration)") + print(" βœ“ Coverage report generated") + print("\nYour PR is ready for submission!") + + +def main(): + """Main entry point.""" + if len(sys.argv) < 2: + print("TerminusDB Python Client Development Scripts") + print("\nUsage: poetry run dev ") + print("\nAvailable commands:") + print(" init-dev - Initialize development environment") + print(" install-dev - Install package in editable mode") + print(" format - Format code with shed") + print(" lint - Run linting checks (read-only)") + print(" lint-fix - Run linting and fix issues automatically") + print(" flake8 - Run flake8 linting only") + print(" check - Run all static analysis checks") + print(" test - Run unit tests") + print(" test-unit - Run unit tests only") + print(" test-integration - Run integration tests") + print(" test-all - Run all tests (unit + integration)") + print(" docs - Build documentation") + print(" tox - Run tox for isolated testing") + print(" clean - Clean build artifacts") + print(" pr - Run all PR preparation checks") + sys.exit(0) + + command = sys.argv[1] + + if command in ["-h", "--help", "help"]: + print("TerminusDB Python Client Development Scripts") + print("\nUsage: poetry run dev ") + print("\nAvailable commands:") + print(" init-dev - Initialize development environment") + print(" install-dev - Install package in editable mode") + print(" format - Format code with shed") + print(" lint - Run linting checks (read-only)") + print(" lint-fix - Run linting and fix issues automatically") + print(" flake8 - Run flake8 linting only") + print(" check - Run all static analysis checks") + print(" test - Run unit tests") + print(" test-unit - Run unit tests only") + print(" test-integration - Run integration tests") + print(" test-all - Run all tests (unit + integration)") + print(" docs - Build documentation") + print(" tox - Run tox for isolated testing") + print(" clean - Clean build artifacts") + print(" pr - Run all PR preparation checks") + sys.exit(0) + + command_map = { + "init": init, + "init-dev": init, + "install": install, + "install-dev": install, + "format": format, + "lint": lint, + "lint-fix": lint_fix, + "flake8": flake8, + "check": check, + "test": test, + "test-unit": test_unit, + "test-integration": test_integration, + "test-all": test_all, + "docs": docs, + "tox": tox, + "clean": clean, + "pr": pr, + } + + if command not in command_map: + print(f"Unknown command: {command}") + print("Run 'poetry run dev --help' to see available commands.") + sys.exit(1) + + # Execute the command + command_map[command]() + + +if __name__ == "__main__": + main() From fb2e43f388d72581fa127e3d7fe82f0b4cbd17e8 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Philippe=20H=C3=B6ij?= Date: Wed, 7 Jan 2026 08:18:19 +0100 Subject: [PATCH 03/11] Update poetry to modern syntax --- poetry.lock | 2 +- pyproject.toml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/poetry.lock b/poetry.lock index dfda58e6..67a9f809 100644 --- a/poetry.lock +++ b/poetry.lock @@ -2076,4 +2076,4 @@ type = ["pytest-mypy"] [metadata] lock-version = "2.1" python-versions = ">=3.9.0,<3.13" -content-hash = "0cef78a9faccb971755e5608baa4b95edbec159bfe68d0123cc820beae74b16d" +content-hash = "1a5ca86c4ad1c60a12c5455d10d5fb46d6c9cd80fafbde8471524204d9995ff5" diff --git a/pyproject.toml b/pyproject.toml index 6fa1ecd3..4fdaf825 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -17,7 +17,7 @@ tqdm = "*" click = ">=8.0" shed = "*" -[tool.poetry.dev-dependencies] +[tool.poetry.group.dev.dependencies] pytest = ">= 3" pytest-cov = "*" pytest-mock = "*" From 7e13ebaf4921383b8cd490bbe420aa0e5370bf75 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Philippe=20H=C3=B6ij?= Date: Wed, 7 Jan 2026 08:18:37 +0100 Subject: [PATCH 04/11] Fix flake8 lint errors --- terminusdb_client/scripts/scripts.py | 2 +- .../test_prefix_management.py | 30 +++++++++---------- 2 files changed, 16 insertions(+), 16 deletions(-) diff --git a/terminusdb_client/scripts/scripts.py b/terminusdb_client/scripts/scripts.py index 2c0d8591..523a23c6 100644 --- a/terminusdb_client/scripts/scripts.py +++ b/terminusdb_client/scripts/scripts.py @@ -242,7 +242,7 @@ def add_docstring(self, obj_dict): result_obj.script += f" {value} = ()\n" else: result_obj.script += ( - f" {value.replace(' ','_')} = '{value}'\n" + f" {value.replace(' ', '_')} = '{value}'\n" ) if obj.get("@documentation"): result_obj.add_docstring(obj) diff --git a/terminusdb_client/tests/integration_tests/test_prefix_management.py b/terminusdb_client/tests/integration_tests/test_prefix_management.py index ba577a21..931d1790 100644 --- a/terminusdb_client/tests/integration_tests/test_prefix_management.py +++ b/terminusdb_client/tests/integration_tests/test_prefix_management.py @@ -16,12 +16,12 @@ def test_db(client): """Create and cleanup a test database.""" import time db_name = f"test_prefix_{int(time.time() * 1000)}" - + client.create_database(db_name, label="Test Prefix DB", description="Database for testing prefix operations") client.connect(db=db_name) - + yield db_name - + # Cleanup try: client.delete_database(db_name) @@ -42,10 +42,10 @@ def test_add_prefix_success(self, client, test_db): def test_add_prefix_duplicate(self, client, test_db): """Test that adding duplicate prefix fails.""" client.add_prefix("ex", "http://example.org/") - + with pytest.raises(Exception) as exc_info: client.add_prefix("ex", "http://example.com/") - + # Should get 400 error with PrefixAlreadyExists assert exc_info.value.response.status_code == 400 @@ -53,14 +53,14 @@ def test_add_prefix_invalid_iri(self, client, test_db): """Test that invalid IRI is rejected.""" with pytest.raises(Exception) as exc_info: client.add_prefix("ex", "not-a-valid-uri") - + assert exc_info.value.response.status_code == 400 def test_add_prefix_reserved(self, client, test_db): """Test that reserved prefix names are rejected.""" with pytest.raises(Exception) as exc_info: client.add_prefix("@custom", "http://example.org/") - + assert exc_info.value.response.status_code == 400 def test_get_prefix_success(self, client, test_db): @@ -73,17 +73,17 @@ def test_get_prefix_not_found(self, client, test_db): """Test that getting non-existent prefix fails.""" with pytest.raises(Exception) as exc_info: client.get_prefix("nonexistent") - + assert exc_info.value.response.status_code == 404 def test_update_prefix_success(self, client, test_db): """Test updating an existing prefix.""" client.add_prefix("ex", "http://example.org/") result = client.update_prefix("ex", "http://example.com/") - + assert result["api:status"] == "api:success" assert result["api:prefix_uri"] == "http://example.com/" - + # Verify the update uri = client.get_prefix("ex") assert uri == "http://example.com/" @@ -92,7 +92,7 @@ def test_update_prefix_not_found(self, client, test_db): """Test that updating non-existent prefix fails.""" with pytest.raises(Exception) as exc_info: client.update_prefix("nonexistent", "http://example.org/") - + assert exc_info.value.response.status_code == 404 def test_upsert_prefix_create(self, client, test_db): @@ -105,7 +105,7 @@ def test_upsert_prefix_update(self, client, test_db): """Test upsert updates prefix if it already exists.""" client.add_prefix("ex", "http://example.org/") result = client.upsert_prefix("ex", "http://example.com/") - + assert result["api:status"] == "api:success" assert result["api:prefix_uri"] == "http://example.com/" @@ -114,7 +114,7 @@ def test_delete_prefix_success(self, client, test_db): client.add_prefix("ex", "http://example.org/") result = client.delete_prefix("ex") assert result["api:status"] == "api:success" - + # Verify deletion with pytest.raises(Exception) as exc_info: client.get_prefix("ex") @@ -124,12 +124,12 @@ def test_delete_prefix_not_found(self, client, test_db): """Test that deleting non-existent prefix fails.""" with pytest.raises(Exception) as exc_info: client.delete_prefix("nonexistent") - + assert exc_info.value.response.status_code == 404 def test_delete_prefix_reserved(self, client, test_db): """Test that deleting reserved prefix fails.""" with pytest.raises(Exception) as exc_info: client.delete_prefix("@base") - + assert exc_info.value.response.status_code == 400 From 20d04609e6f19b3cbb9cb8acb083de86be90f646 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Philippe=20H=C3=B6ij?= Date: Wed, 7 Jan 2026 08:31:43 +0100 Subject: [PATCH 05/11] Improve the ability to run make pr --- CONTRIBUTING.md | 5 +- terminusdb_client/scripts/dev.py | 131 +++++++++++++++------------ terminusdb_client/scripts/scripts.py | 16 ++-- 3 files changed, 83 insertions(+), 69 deletions(-) diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index 9ffe6f08..59a10c6f 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -124,10 +124,11 @@ The project includes a `dev` script that provides the following commands: |--------|-------------| | `poetry run dev init-dev` | Initialize development environment | | `poetry run dev install-dev` | Install package in editable mode | -| `poetry run dev format` | Format code with shed | -| `poetry run dev lint` | Run linting checks (read-only) | +| `poetry run dev format` | Format code with black and ruff | +| `poetry run dev lint` | Run flake8 linting (read-only) | | `poetry run dev lint-fix` | Run linting and fix issues automatically | | `poetry run dev flake8` | Run flake8 linting only | +| `poetry run dev ruff` | Run ruff linting only | | `poetry run dev check` | Run all static analysis checks | | `poetry run dev test` | Run unit tests | | `poetry run dev test-unit` | Run unit tests with coverage | diff --git a/terminusdb_client/scripts/dev.py b/terminusdb_client/scripts/dev.py index c319f68c..2bdf7d4c 100644 --- a/terminusdb_client/scripts/dev.py +++ b/terminusdb_client/scripts/dev.py @@ -4,12 +4,18 @@ These scripts provide centralized development commands through Poetry. """ +import glob import os import shutil import subprocess import sys from pathlib import Path +# Constants +PYTHON_CLIENT_DIR = "terminusdb_client/" +RUNNING_FLAKE8_MSG = "Running flake8..." +RUNNING_RUFF_MSG = "Running ruff..." +RUFF_WARNING_MSG = "⚠️ Ruff found some issues it couldn't fix automatically:\n Run 'poetry run dev ruff' to see all issues" # Constants for pytest arguments PYTEST_TB_SHORT = "--tb=short" PYTEST_COV = "--cov=terminusdb_client" @@ -56,75 +62,64 @@ def install(): def format(): - """Format code with shed.""" + """Format code with black and ruff (no auto-commits).""" print("Formatting code...") - run_command(["poetry", "run", "shed"]) + # Find all Python files and format them + python_files = glob.glob("terminusdb_client/**/*.py", recursive=True) + if python_files: + # Run black for formatting + print("Running black...") + run_command(["poetry", "run", "black"] + python_files) + # Run ruff for import sorting and other fixes (ignore unfixed errors) + print(RUNNING_RUFF_MSG) + try: + run_command(["poetry", "run", "ruff", "check", "--fix", PYTHON_CLIENT_DIR]) + except subprocess.CalledProcessError: + print(RUFF_WARNING_MSG) + else: + print("No Python files found to format.") def lint(): """Run linting checks (read-only).""" print("Running linting checks...") - # Check code formatting with shed - print("Checking code formatting with shed...") - temp_dir = Path("/tmp/terminusdb-lint-check") - temp_dir.mkdir(exist_ok=True) - - try: - # Copy code to temp directory - src_dir = Path("terminusdb_client") - if src_dir.exists(): - shutil.copytree(src_dir, temp_dir / src_dir.name, dirs_exist_ok=True) - - # Initialize git repo in temp directory if not exists - subprocess.run(["git", "init"], cwd=temp_dir, capture_output=True) - subprocess.run(["git", "config", "user.email", "test@example.com"], cwd=temp_dir, capture_output=True) - subprocess.run(["git", "config", "user.name", "Test User"], cwd=temp_dir, capture_output=True) - subprocess.run(["git", "add", "."], cwd=temp_dir, capture_output=True) - subprocess.run(["git", "commit", "-m", "initial"], cwd=temp_dir, capture_output=True) - - # Run shed in temp directory - subprocess.run( - ["poetry", "run", "shed"], - cwd=temp_dir, - capture_output=True - ) - - # Check if any files were modified - git_result = subprocess.run( - ["git", "status", "--porcelain"], - cwd=temp_dir, - capture_output=True, - text=True - ) - - if git_result.returncode != 0 or git_result.stdout.strip(): - print("❌ Code formatting issues found. Run 'poetry run dev lint-fix' to fix.") - sys.exit(1) - else: - print("βœ… Code formatting is correct.") - finally: - # Clean up - shutil.rmtree(temp_dir, ignore_errors=True) - # Run flake8 - print("Running flake8...") + print(RUNNING_FLAKE8_MSG) run_command(["poetry", "run", "flake8", "terminusdb_client"]) def flake8(): """Run flake8 linting only.""" - print("Running flake8...") + print(RUNNING_FLAKE8_MSG) run_command(["poetry", "run", "flake8", "terminusdb_client"]) +def ruff(): + """Run ruff linting only.""" + print(RUNNING_RUFF_MSG) + run_command(["poetry", "run", "ruff", "check", PYTHON_CLIENT_DIR]) + + def lint_fix(): """Run linting and fix issues automatically.""" print("Running linting fixes...") - # Format code with shed - print("Fixing code formatting with shed...") - run_command(["poetry", "run", "shed"]) + # Format code with black and ruff + print("Fixing code formatting...") + python_files = glob.glob("terminusdb_client/**/*.py", recursive=True) + if python_files: + # Run black for formatting + print("Running black...") + run_command(["poetry", "run", "black"] + python_files) + # Run ruff for import sorting and other fixes + print(RUNNING_RUFF_MSG) + try: + run_command(["poetry", "run", "ruff", "check", "--fix", PYTHON_CLIENT_DIR]) + except subprocess.CalledProcessError: + print(RUFF_WARNING_MSG) + else: + print("No Python files found to format.") print("βœ… Linting fixes completed!") print("Note: Some issues (like flake8 violations) may need manual fixes.") @@ -253,19 +248,36 @@ def pr(): # 1. Clean clean() - # 2. Format - format() + # 2. Check formatting (don't fix) + print("\nChecking code formatting...") + try: + run_command(["poetry", "run", "black", "--check", "--diff", "terminusdb_client/"]) + print("βœ… Black formatting is correct.") + except subprocess.CalledProcessError: + print("❌ Black formatting issues found.") + print(" Run 'poetry run dev format' to fix formatting issues") + sys.exit(1) # 3. Lint lint() + + # 4. Check ruff for any remaining issues + print("\nChecking for ruff issues...") + try: + run_command(["poetry", "run", "ruff", "check", PYTHON_CLIENT_DIR]) + print("βœ… No ruff issues found.") + except subprocess.CalledProcessError: + print("❌ Ruff issues found. Please fix them manually.") + print(" Run 'poetry run dev ruff' to see all issues") + sys.exit(1) - # 4. Run all tests + # 5. Run all tests test_all() print("\nAll PR preparation checks completed successfully!") print("\nSummary of checks performed:") - print(" βœ“ Code formatted with shed") - print(" βœ“ Linting passed (flake8, shed check)") + print(" βœ“ Code formatting is correct (black, ruff)") + print(" βœ“ Linting passed (flake8, ruff check)") print(" βœ“ All tests passed (unit + integration)") print(" βœ“ Coverage report generated") print("\nYour PR is ready for submission!") @@ -279,10 +291,11 @@ def main(): print("\nAvailable commands:") print(" init-dev - Initialize development environment") print(" install-dev - Install package in editable mode") - print(" format - Format code with shed") - print(" lint - Run linting checks (read-only)") + print(" format - Format code with black and ruff") + print(" lint - Run flake8 linting (read-only)") print(" lint-fix - Run linting and fix issues automatically") print(" flake8 - Run flake8 linting only") + print(" ruff - Run ruff linting only") print(" check - Run all static analysis checks") print(" test - Run unit tests") print(" test-unit - Run unit tests only") @@ -302,10 +315,11 @@ def main(): print("\nAvailable commands:") print(" init-dev - Initialize development environment") print(" install-dev - Install package in editable mode") - print(" format - Format code with shed") - print(" lint - Run linting checks (read-only)") + print(" format - Format code with black and ruff") + print(" lint - Run flake8 linting (read-only)") print(" lint-fix - Run linting and fix issues automatically") print(" flake8 - Run flake8 linting only") + print(" ruff - Run ruff linting only") print(" check - Run all static analysis checks") print(" test - Run unit tests") print(" test-unit - Run unit tests only") @@ -326,6 +340,7 @@ def main(): "lint": lint, "lint-fix": lint_fix, "flake8": flake8, + "ruff": ruff, "check": check, "test": test, "test-unit": test_unit, diff --git a/terminusdb_client/scripts/scripts.py b/terminusdb_client/scripts/scripts.py index 523a23c6..fe23955c 100644 --- a/terminusdb_client/scripts/scripts.py +++ b/terminusdb_client/scripts/scripts.py @@ -8,11 +8,10 @@ from importlib import import_module import click +import terminusdb_client.woqlschema.woql_schema as woqlschema from shed import shed from tqdm import tqdm -import terminusdb_client.woqlschema.woql_schema as woqlschema - from .. import woql_type as wt from ..client.Client import Client from ..errors import InterfaceError @@ -215,10 +214,8 @@ def add_docstring(self, obj_dict): print_script += '"""\n' for obj_str in dir(woqlschema): obj = eval(f"woqlschema.{obj_str}") # noqa: S307 - if ( - isinstance(obj, woqlschema.TerminusClass) - or isinstance(obj, enum.EnumMeta) - or isinstance(obj, type(woqlschema.TerminusKey)) + if isinstance( + obj, (woqlschema.TerminusClass, enum.EnumMeta, type(woqlschema.TerminusKey)) ): import_objs.append(obj_str) print_script += "from typing import List, Optional, Set\n" @@ -353,7 +350,7 @@ def commit(message): ) for obj_str in dir(schema_plan): obj = eval(f"schema_plan.{obj_str}") # noqa: S307 - if isinstance(obj, woqlschema.TerminusClass) or isinstance(obj, enum.EnumMeta): + if isinstance(obj, (woqlschema.TerminusClass, enum.EnumMeta)): if obj_str not in ["DocumentTemplate", "EnumTemplate", "TaggedUnion"]: schema_obj.add_obj(obj.__name__, obj) if message is None: @@ -469,7 +466,7 @@ def _df_to_schema(class_name, df): converted_type = class_name else: converted_type = np_to_buildin[dtype.type] - if converted_type == object: + if converted_type is object: converted_type = str # pandas treats all string as objects converted_type = wt.to_woql_type(converted_type) @@ -647,7 +644,8 @@ def exportcsv(class_obj, keepid, maxdep, filename=None): def alldocs(schema, type_, query, head, export, keepid, maxdep, filename=None): """Get all documents in the database, use --schema to specify schema, --type to select type and -q to make queries (e.g. -q date=2021-07-01) - If using --type and not --schema, can export using -e with options: --keepid, --maxdep and --filename""" + If using --type and not --schema, can export using -e with options: --keepid, --maxdep and --filename + """ settings = _load_settings() status = _load_settings(".TDB", check=[]) settings.update(status) From c7085ed6d93e97b436290fc36a04e1ef5e3721b7 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Philippe=20H=C3=B6ij?= Date: Wed, 7 Jan 2026 08:35:09 +0100 Subject: [PATCH 06/11] Fix ruff issues --- terminusdb_client/schema/schema.py | 4 ++-- terminusdb_client/scripts/dev.py | 13 ++++++++++++- terminusdb_client/woql_type.py | 3 --- terminusdb_client/woqlquery/woql_query.py | 2 +- 4 files changed, 15 insertions(+), 7 deletions(-) diff --git a/terminusdb_client/schema/schema.py b/terminusdb_client/schema/schema.py index 686a7617..95fdd25c 100644 --- a/terminusdb_client/schema/schema.py +++ b/terminusdb_client/schema/schema.py @@ -98,7 +98,7 @@ def _check_mismatch_type(prop, prop_value, prop_type): f"Property {prop} should be of type {prop_type_id} but got value of type {prop_value_id}" ) else: - if prop_type == int: + if prop_type is int: prop_value = int(prop_value) # TODO: This is now broken # check_type(prop, prop_value, prop_type) @@ -224,7 +224,7 @@ class DocumentTemplate(metaclass=TerminusClass): def __setattr__(self, name, value): if name[0] != "_" and value is not None: correct_type = self._annotations.get(name) - if correct_type == int: + if correct_type is int: try: value = int(value) except ValueError: diff --git a/terminusdb_client/scripts/dev.py b/terminusdb_client/scripts/dev.py index 2bdf7d4c..4d16ba8d 100644 --- a/terminusdb_client/scripts/dev.py +++ b/terminusdb_client/scripts/dev.py @@ -26,7 +26,18 @@ def run_command(cmd, cwd=None, check=True): """Run a shell command and return the result.""" print(f"Running: {' '.join(cmd)}") - return subprocess.run(cmd, cwd=cwd, check=check) + try: + result = subprocess.run(cmd, cwd=cwd, check=check, capture_output=True, text=True) + if result.stdout: + print(result.stdout) + return result + except subprocess.CalledProcessError as e: + if e.stdout: + print(e.stdout) + if e.stderr: + print(e.stderr, file=sys.stderr) + # Re-raise with a cleaner message + raise SystemExit(1) def init(): diff --git a/terminusdb_client/woql_type.py b/terminusdb_client/woql_type.py index d4aac9ef..885f97db 100644 --- a/terminusdb_client/woql_type.py +++ b/terminusdb_client/woql_type.py @@ -38,9 +38,7 @@ bool: "xsd:boolean", float: "xsd:double", int: "xsd:integer", - long: "xsd:long", dict: "sys:JSON", - gYear: "xsd:gYear", dt.datetime: "xsd:dateTime", dt.date: "xsd:date", dt.time: "xsd:time", @@ -68,7 +66,6 @@ nonNegativeInteger : "xsd:nonNegativeInteger", base64Binary : "xsd:base64Binary", hexBinary : "xsd:hexBinary", - anyURI : "xsd:anyURI", language : "xsd:language", normalizedString : "xsd:normalizedString", token : "xsd:token", diff --git a/terminusdb_client/woqlquery/woql_query.py b/terminusdb_client/woqlquery/woql_query.py index d54ea363..f2d8e48e 100644 --- a/terminusdb_client/woqlquery/woql_query.py +++ b/terminusdb_client/woqlquery/woql_query.py @@ -2850,7 +2850,7 @@ def group_by(self, group_vars, template, output, groupquery=None): if self._cursor.get("@type"): self._wrap_cursor_with_and() self._cursor["@type"] = "GroupBy" - if not type(group_vars) is list: + if type(group_vars) is not list: group_vars = [group_vars] self._cursor["group_by"] = self._raw_var_list(group_vars) self._cursor["template"] = self._clean_object(template) From c0e9a330800033a5d7ec85b32d100ae7548b5a86 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Philippe=20H=C3=B6ij?= Date: Wed, 7 Jan 2026 08:38:00 +0100 Subject: [PATCH 07/11] Better instructions --- CONTRIBUTING.md | 18 ++++++++++++++++-- 1 file changed, 16 insertions(+), 2 deletions(-) diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index 59a10c6f..936ee692 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -28,10 +28,13 @@ poetry install --with dev # 6. Install the package in editable mode poetry run dev install-dev -# 7. Run tests to verify everything works +# 7. Start TerminusDB server (for integration tests) +docker run --pull always -d -p 127.0.0.1:6363:6363 -v terminusdb_storage:/app/terminusdb/storage --name terminusdb terminusdb/terminusdb-server:v12 + +# 8. Run tests to verify everything works poetry run dev test -# 8. Get help with available commands +# 9. Get help with available commands poetry run dev --help ``` @@ -64,6 +67,17 @@ Make sure you have Python>=3.9 installed. We use [Poetry](https://python-poetry. poetry run dev install-dev ``` +5. Start TerminusDB server (required for integration tests): + ```bash + docker run --pull always -d -p 127.0.0.1:6363:6363 -v terminusdb_storage:/app/terminusdb/storage --name terminusdb terminusdb/terminusdb-server:v12 + ``` + + To stop the server when done: + ```bash + docker stop terminusdb + docker rm terminusdb + ``` + **To run integration tests, Docker must be installed locally.** We use [shed](https://pypi.org/project/shed/) to lint our code. You can run it manually with `poetry run dev lint`, or set up a pre-commit hook (requires Python 3.10+): From c6ae26ea91a8db906dbcc372ff702321eeba51ac Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Philippe=20H=C3=B6ij?= Date: Wed, 7 Jan 2026 08:41:24 +0100 Subject: [PATCH 08/11] Fix lint --- terminusdb_client/scripts/dev.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/terminusdb_client/scripts/dev.py b/terminusdb_client/scripts/dev.py index 4d16ba8d..3aabf43a 100644 --- a/terminusdb_client/scripts/dev.py +++ b/terminusdb_client/scripts/dev.py @@ -271,7 +271,7 @@ def pr(): # 3. Lint lint() - + # 4. Check ruff for any remaining issues print("\nChecking for ruff issues...") try: From 17218a517f804e2116aa8da0d6bb3d0f39e87963 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Philippe=20H=C3=B6ij?= Date: Wed, 7 Jan 2026 10:06:11 +0100 Subject: [PATCH 09/11] Add documentation dependencies --- poetry.lock | 227 ++++++++++++++++++++++++++++++------------------- pyproject.toml | 3 + 2 files changed, 144 insertions(+), 86 deletions(-) diff --git a/poetry.lock b/poetry.lock index 67a9f809..2530b658 100644 --- a/poetry.lock +++ b/poetry.lock @@ -6,33 +6,19 @@ version = "0.7.16" description = "A light, configurable Sphinx theme" optional = false python-versions = ">=3.9" -groups = ["main"] -markers = "python_version < \"3.11\"" +groups = ["main", "dev"] files = [ {file = "alabaster-0.7.16-py3-none-any.whl", hash = "sha256:b46733c07dce03ae4e150330b975c75737fa60f0a7c591b6c8bf4928a28e2c92"}, {file = "alabaster-0.7.16.tar.gz", hash = "sha256:75a8b99c28a5dad50dd7f8ccdd447a121ddb3892da9e53d1ca5cca3106d58d65"}, ] -[[package]] -name = "alabaster" -version = "1.0.0" -description = "A light, configurable Sphinx theme" -optional = false -python-versions = ">=3.10" -groups = ["main"] -markers = "python_version >= \"3.11\"" -files = [ - {file = "alabaster-1.0.0-py3-none-any.whl", hash = "sha256:fc6786402dc3fcb2de3cabd5fe455a2db534b371124f1f21de8731783dec828b"}, - {file = "alabaster-1.0.0.tar.gz", hash = "sha256:c00dca57bca26fa62a6d7d0a9fcce65f3e026e9bfe33e9c538fd3fbb2144fd9e"}, -] - [[package]] name = "babel" version = "2.17.0" description = "Internationalization utilities" optional = false python-versions = ">=3.8" -groups = ["main"] +groups = ["main", "dev"] files = [ {file = "babel-2.17.0-py3-none-any.whl", hash = "sha256:4d0b53093fdfb4b21c92b5213dba5a1b23885afa8383709427046b21c366e5f2"}, {file = "babel-2.17.0.tar.gz", hash = "sha256:0c54cffb19f690cdcc52a3b50bcbf71e07a808d1c80d549f2459b9d2cf0afb9d"}, @@ -152,7 +138,7 @@ version = "2026.1.4" description = "Python package for providing Mozilla's CA Bundle." optional = false python-versions = ">=3.7" -groups = ["main"] +groups = ["main", "dev"] files = [ {file = "certifi-2026.1.4-py3-none-any.whl", hash = "sha256:9943707519e4add1115f44c2bc244f782c0249876bf51b6599fee1ffbedd685c"}, {file = "certifi-2026.1.4.tar.gz", hash = "sha256:ac726dd470482006e014ad384921ed6438c457018f4b3d204aea4281258b2120"}, @@ -164,7 +150,7 @@ version = "3.4.4" description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet." optional = false python-versions = ">=3.7" -groups = ["main"] +groups = ["main", "dev"] files = [ {file = "charset_normalizer-3.4.4-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:e824f1492727fa856dd6eda4f7cee25f8518a12f3c4a56a74e8095695089cf6d"}, {file = "charset_normalizer-3.4.4-cp310-cp310-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl", hash = "sha256:4bd5d4137d500351a30687c2d3971758aac9a19208fc110ccb9d7188fbe709e8"}, @@ -287,7 +273,7 @@ version = "8.1.8" description = "Composable command line interface toolkit" optional = false python-versions = ">=3.7" -groups = ["main"] +groups = ["main", "dev"] markers = "python_version < \"3.11\"" files = [ {file = "click-8.1.8-py3-none-any.whl", hash = "sha256:63c132bbbed01578a06712a2d1f497bb62d9c1c0d329b7903a866228027263b2"}, @@ -303,7 +289,7 @@ version = "8.3.1" description = "Composable command line interface toolkit" optional = false python-versions = ">=3.10" -groups = ["main"] +groups = ["main", "dev"] markers = "python_version >= \"3.11\"" files = [ {file = "click-8.3.1-py3-none-any.whl", hash = "sha256:981153a64e25f12d547d3426c367a4857371575ee7ad18df2a6183ab0545b2a6"}, @@ -320,11 +306,11 @@ description = "Cross-platform colored terminal text." optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7" groups = ["main", "dev"] +markers = "sys_platform == \"win32\" or platform_system == \"Windows\"" files = [ {file = "colorama-0.4.6-py2.py3-none-any.whl", hash = "sha256:4f1d9991f5acc0ca119f9d443620b77f9d6b33703e51011c16baf57afb285fc6"}, {file = "colorama-0.4.6.tar.gz", hash = "sha256:08695f5cb7ed6e0531a20572697297273c47b8cae5a63ffc6d6ed5c201be6e44"}, ] -markers = {main = "sys_platform == \"win32\" or platform_system == \"Windows\"", dev = "sys_platform == \"win32\""} [[package]] name = "com2ann" @@ -571,26 +557,12 @@ version = "0.21.2" description = "Docutils -- Python Documentation Utilities" optional = false python-versions = ">=3.9" -groups = ["main"] -markers = "python_version < \"3.11\"" +groups = ["main", "dev"] files = [ {file = "docutils-0.21.2-py3-none-any.whl", hash = "sha256:dafca5b9e384f0e419294eb4d2ff9fa826435bf15f15b7bd45723e8ad76811b2"}, {file = "docutils-0.21.2.tar.gz", hash = "sha256:3a6b18732edf182daa3cd12775bbb338cf5691468f91eeeb109deff6ebfa986f"}, ] -[[package]] -name = "docutils" -version = "0.22.4" -description = "Docutils -- Python Documentation Utilities" -optional = false -python-versions = ">=3.9" -groups = ["main"] -markers = "python_version >= \"3.11\"" -files = [ - {file = "docutils-0.22.4-py3-none-any.whl", hash = "sha256:d0013f540772d1420576855455d050a2180186c91c15779301ac2ccb3eeb68de"}, - {file = "docutils-0.22.4.tar.gz", hash = "sha256:4db53b1fde9abecbb74d91230d32ab626d94f6badfc575d6db9194a49df29968"}, -] - [[package]] name = "exceptiongroup" version = "1.3.1" @@ -648,7 +620,7 @@ version = "3.11" description = "Internationalized Domain Names in Applications (IDNA)" optional = false python-versions = ">=3.8" -groups = ["main"] +groups = ["main", "dev"] files = [ {file = "idna-3.11-py3-none-any.whl", hash = "sha256:771a87f49d9defaf64091e6e6fe9c18d4833f140bd19464795bc32d966ca37ea"}, {file = "idna-3.11.tar.gz", hash = "sha256:795dafcc9c04ed0c1fb032c2aa73654d8e8c5023a7df64a53f39190ada629902"}, @@ -663,7 +635,7 @@ version = "1.4.1" description = "Getting image size from png/jpeg/jpeg2000/gif file" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -groups = ["main"] +groups = ["main", "dev"] files = [ {file = "imagesize-1.4.1-py2.py3-none-any.whl", hash = "sha256:0d8d18d08f840c19d0ee7ca1fd82490fdc3729b7ac93f49870406ddde8ef8d8b"}, {file = "imagesize-1.4.1.tar.gz", hash = "sha256:69150444affb9cb0d5cc5a92b3676f0b2fb7cd9ae39e947a5e11a36b4497cd4a"}, @@ -675,7 +647,7 @@ version = "8.7.1" description = "Read metadata from Python packages" optional = false python-versions = ">=3.9" -groups = ["main"] +groups = ["main", "dev"] markers = "python_version < \"3.10\"" files = [ {file = "importlib_metadata-8.7.1-py3-none-any.whl", hash = "sha256:5a1f80bf1daa489495071efbb095d75a634cf28a8bc299581244063b53176151"}, @@ -726,7 +698,7 @@ version = "3.1.6" description = "A very fast and expressive template engine." optional = false python-versions = ">=3.7" -groups = ["main"] +groups = ["main", "dev"] files = [ {file = "jinja2-3.1.6-py3-none-any.whl", hash = "sha256:85ece4451f492d0c13c5dd7c13a64681a86afae63a5f347908daf103ce6d2f67"}, {file = "jinja2-3.1.6.tar.gz", hash = "sha256:0137fb05990d35f1275a587e9aee6d56da821fc83491a0fb838183be43f66d6d"}, @@ -823,7 +795,7 @@ version = "3.0.3" description = "Safely add untrusted strings to HTML/XML markup." optional = false python-versions = ">=3.9" -groups = ["main"] +groups = ["main", "dev"] files = [ {file = "markupsafe-3.0.3-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:2f981d352f04553a7171b8e44369f2af4055f888dfb147d55e42d29e29e74559"}, {file = "markupsafe-3.0.3-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:e1c1493fb6e50ab01d20a22826e57520f1284df32f2d8601fdd90b6304601419"}, @@ -1603,7 +1575,7 @@ version = "2.32.5" description = "Python HTTP for Humans." optional = false python-versions = ">=3.9" -groups = ["main"] +groups = ["main", "dev"] files = [ {file = "requests-2.32.5-py3-none-any.whl", hash = "sha256:2462f94637a34fd532264295e186976db0f5d453d1cdd31473c85a6a161affb6"}, {file = "requests-2.32.5.tar.gz", hash = "sha256:dbba0bac56e100853db0ea71b82b4dfd5fe2bf6d3754a8893c3af500cec7d7cf"}, @@ -1625,13 +1597,29 @@ version = "4.1.0" description = "Manipulate well-formed Roman numerals" optional = false python-versions = ">=3.10" -groups = ["main"] +groups = ["main", "dev"] markers = "python_version >= \"3.11\"" files = [ {file = "roman_numerals-4.1.0-py3-none-any.whl", hash = "sha256:647ba99caddc2cc1e55a51e4360689115551bf4476d90e8162cf8c345fe233c7"}, {file = "roman_numerals-4.1.0.tar.gz", hash = "sha256:1af8b147eb1405d5839e78aeb93131690495fe9da5c91856cb33ad55a7f1e5b2"}, ] +[[package]] +name = "roman-numerals-py" +version = "4.1.0" +description = "This package is deprecated, switch to roman-numerals." +optional = false +python-versions = ">=3.10" +groups = ["main", "dev"] +markers = "python_version >= \"3.11\"" +files = [ + {file = "roman_numerals_py-4.1.0-py3-none-any.whl", hash = "sha256:553114c1167141c1283a51743759723ecd05604a1b6b507225e91dc1a6df0780"}, + {file = "roman_numerals_py-4.1.0.tar.gz", hash = "sha256:f5d7b2b4ca52dd855ef7ab8eb3590f428c0b1ea480736ce32b01fef2a5f8daf9"}, +] + +[package.dependencies] +roman-numerals = "4.1.0" + [[package]] name = "ruff" version = "0.14.10" @@ -1698,7 +1686,7 @@ version = "3.0.1" description = "This package provides 32 stemmers for 30 languages generated from Snowball algorithms." optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*" -groups = ["main"] +groups = ["main", "dev"] files = [ {file = "snowballstemmer-3.0.1-py3-none-any.whl", hash = "sha256:6cd7b3897da8d6c9ffb968a6781fa6532dce9c3618a4b127d920dab764a19064"}, {file = "snowballstemmer-3.0.1.tar.gz", hash = "sha256:6d5eeeec8e9f84d4d56b847692bacf79bc2c8e90c7f80ca4444ff8b6f2e52895"}, @@ -1710,7 +1698,7 @@ version = "7.4.7" description = "Python documentation generator" optional = false python-versions = ">=3.9" -groups = ["main"] +groups = ["main", "dev"] markers = "python_version < \"3.11\"" files = [ {file = "sphinx-7.4.7-py3-none-any.whl", hash = "sha256:c2419e2135d11f1951cd994d6eb18a1835bd8fdd8429f9ca375dc1f3281bd239"}, @@ -1744,28 +1732,28 @@ test = ["cython (>=3.0)", "defusedxml (>=0.7.1)", "pytest (>=8.0)", "setuptools [[package]] name = "sphinx" -version = "9.0.4" +version = "8.2.3" description = "Python documentation generator" optional = false python-versions = ">=3.11" -groups = ["main"] -markers = "python_version == \"3.11\"" +groups = ["main", "dev"] +markers = "python_version >= \"3.11\"" files = [ - {file = "sphinx-9.0.4-py3-none-any.whl", hash = "sha256:5bebc595a5e943ea248b99c13814c1c5e10b3ece718976824ffa7959ff95fffb"}, - {file = "sphinx-9.0.4.tar.gz", hash = "sha256:594ef59d042972abbc581d8baa577404abe4e6c3b04ef61bd7fc2acbd51f3fa3"}, + {file = "sphinx-8.2.3-py3-none-any.whl", hash = "sha256:4405915165f13521d875a8c29c8970800a0141c14cc5416a38feca4ea5d9b9c3"}, + {file = "sphinx-8.2.3.tar.gz", hash = "sha256:398ad29dee7f63a75888314e9424d40f52ce5a6a87ae88e7071e80af296ec348"}, ] [package.dependencies] alabaster = ">=0.7.14" babel = ">=2.13" colorama = {version = ">=0.4.6", markers = "sys_platform == \"win32\""} -docutils = ">=0.20,<0.23" +docutils = ">=0.20,<0.22" imagesize = ">=1.3" Jinja2 = ">=3.1" packaging = ">=23.0" Pygments = ">=2.17" requests = ">=2.30.0" -roman-numerals = ">=1.0.0" +roman-numerals-py = ">=1.0.0" snowballstemmer = ">=2.2" sphinxcontrib-applehelp = ">=1.0.7" sphinxcontrib-devhelp = ">=1.0.6" @@ -1774,37 +1762,89 @@ sphinxcontrib-jsmath = ">=1.0.1" sphinxcontrib-qthelp = ">=1.0.6" sphinxcontrib-serializinghtml = ">=1.1.9" +[package.extras] +docs = ["sphinxcontrib-websupport"] +lint = ["betterproto (==2.0.0b6)", "mypy (==1.15.0)", "pypi-attestations (==0.0.21)", "pyright (==1.1.395)", "pytest (>=8.0)", "ruff (==0.9.9)", "sphinx-lint (>=0.9)", "types-Pillow (==10.2.0.20240822)", "types-Pygments (==2.19.0.20250219)", "types-colorama (==0.4.15.20240311)", "types-defusedxml (==0.7.0.20240218)", "types-docutils (==0.21.0.20241128)", "types-requests (==2.32.0.20241016)", "types-urllib3 (==1.26.25.14)"] +test = ["cython (>=3.0)", "defusedxml (>=0.7.1)", "pytest (>=8.0)", "pytest-xdist[psutil] (>=3.4)", "setuptools (>=70.0)", "typing_extensions (>=4.9)"] + [[package]] -name = "sphinx" -version = "9.1.0" -description = "Python documentation generator" +name = "sphinx-autodoc-typehints" +version = "2.3.0" +description = "Type hints (PEP 484) support for the Sphinx autodoc extension" optional = false -python-versions = ">=3.12" -groups = ["main"] -markers = "python_version == \"3.12\"" +python-versions = ">=3.9" +groups = ["dev"] +markers = "python_version < \"3.11\"" files = [ - {file = "sphinx-9.1.0-py3-none-any.whl", hash = "sha256:c84fdd4e782504495fe4f2c0b3413d6c2bf388589bb352d439b2a3bb99991978"}, - {file = "sphinx-9.1.0.tar.gz", hash = "sha256:7741722357dd75f8190766926071fed3bdc211c74dd2d7d4df5404da95930ddb"}, + {file = "sphinx_autodoc_typehints-2.3.0-py3-none-any.whl", hash = "sha256:3098e2c6d0ba99eacd013eb06861acc9b51c6e595be86ab05c08ee5506ac0c67"}, + {file = "sphinx_autodoc_typehints-2.3.0.tar.gz", hash = "sha256:535c78ed2d6a1bad393ba9f3dfa2602cf424e2631ee207263e07874c38fde084"}, ] [package.dependencies] -alabaster = ">=0.7.14" -babel = ">=2.13" -colorama = {version = ">=0.4.6", markers = "sys_platform == \"win32\""} -docutils = ">=0.21,<0.23" -imagesize = ">=1.3" -Jinja2 = ">=3.1" -packaging = ">=23.0" -Pygments = ">=2.17" -requests = ">=2.30.0" -roman-numerals = ">=1.0.0" -snowballstemmer = ">=2.2" -sphinxcontrib-applehelp = ">=1.0.7" -sphinxcontrib-devhelp = ">=1.0.6" -sphinxcontrib-htmlhelp = ">=2.0.6" -sphinxcontrib-jsmath = ">=1.0.1" -sphinxcontrib-qthelp = ">=1.0.6" -sphinxcontrib-serializinghtml = ">=1.1.9" +sphinx = ">=7.3.5" + +[package.extras] +docs = ["furo (>=2024.1.29)"] +numpy = ["nptyping (>=2.5)"] +testing = ["covdefaults (>=2.3)", "coverage (>=7.4.4)", "defusedxml (>=0.7.1)", "diff-cover (>=9)", "pytest (>=8.1.1)", "pytest-cov (>=5)", "sphobjinv (>=2.3.1)", "typing-extensions (>=4.11)"] + +[[package]] +name = "sphinx-autodoc-typehints" +version = "2.5.0" +description = "Type hints (PEP 484) support for the Sphinx autodoc extension" +optional = false +python-versions = ">=3.10" +groups = ["dev"] +markers = "python_version >= \"3.11\"" +files = [ + {file = "sphinx_autodoc_typehints-2.5.0-py3-none-any.whl", hash = "sha256:53def4753239683835b19bfa8b68c021388bd48a096efcb02cdab508ece27363"}, + {file = "sphinx_autodoc_typehints-2.5.0.tar.gz", hash = "sha256:259e1026b218d563d72743f417fcc25906a9614897fe37f91bd8d7d58f748c3b"}, +] + +[package.dependencies] +sphinx = ">=8.0.2" + +[package.extras] +docs = ["furo (>=2024.8.6)"] +numpy = ["nptyping (>=2.5)"] +testing = ["covdefaults (>=2.3)", "coverage (>=7.6.1)", "defusedxml (>=0.7.1)", "diff-cover (>=9.1.1)", "pytest (>=8.3.2)", "pytest-cov (>=5)", "sphobjinv (>=2.3.1.1)", "typing-extensions (>=4.12.2)"] + +[[package]] +name = "sphinx-click" +version = "5.2.1" +description = "Sphinx extension that automatically documents click applications" +optional = false +python-versions = ">=3.8" +groups = ["dev"] +files = [ + {file = "sphinx_click-5.2.1-py3-none-any.whl", hash = "sha256:7aaa97bdce6fe315b3e719c085cd566e75470cbd91f1f6998b91213a09b8e7ec"}, + {file = "sphinx_click-5.2.1.tar.gz", hash = "sha256:a669773f76db05a3e04c163da91cd5e7db1a4761a6ea9eb074404a393094cde7"}, +] + +[package.dependencies] +click = ">=7.0" +docutils = "*" +sphinx = ">=2.0" + +[[package]] +name = "sphinx-rtd-theme" +version = "3.0.2" +description = "Read the Docs theme for Sphinx" +optional = false +python-versions = ">=3.8" +groups = ["dev"] +files = [ + {file = "sphinx_rtd_theme-3.0.2-py2.py3-none-any.whl", hash = "sha256:422ccc750c3a3a311de4ae327e82affdaf59eb695ba4936538552f3b00f4ee13"}, + {file = "sphinx_rtd_theme-3.0.2.tar.gz", hash = "sha256:b7457bc25dda723b20b086a670b9953c859eab60a2a03ee8eb2bb23e176e5f85"}, +] + +[package.dependencies] +docutils = ">0.18,<0.22" +sphinx = ">=6,<9" +sphinxcontrib-jquery = ">=4,<5" + +[package.extras] +dev = ["bump2version", "transifex-client", "twine", "wheel"] [[package]] name = "sphinxcontrib-applehelp" @@ -1812,7 +1852,7 @@ version = "2.0.0" description = "sphinxcontrib-applehelp is a Sphinx extension which outputs Apple help books" optional = false python-versions = ">=3.9" -groups = ["main"] +groups = ["main", "dev"] files = [ {file = "sphinxcontrib_applehelp-2.0.0-py3-none-any.whl", hash = "sha256:4cd3f0ec4ac5dd9c17ec65e9ab272c9b867ea77425228e68ecf08d6b28ddbdb5"}, {file = "sphinxcontrib_applehelp-2.0.0.tar.gz", hash = "sha256:2f29ef331735ce958efa4734873f084941970894c6090408b079c61b2e1c06d1"}, @@ -1829,7 +1869,7 @@ version = "2.0.0" description = "sphinxcontrib-devhelp is a sphinx extension which outputs Devhelp documents" optional = false python-versions = ">=3.9" -groups = ["main"] +groups = ["main", "dev"] files = [ {file = "sphinxcontrib_devhelp-2.0.0-py3-none-any.whl", hash = "sha256:aefb8b83854e4b0998877524d1029fd3e6879210422ee3780459e28a1f03a8a2"}, {file = "sphinxcontrib_devhelp-2.0.0.tar.gz", hash = "sha256:411f5d96d445d1d73bb5d52133377b4248ec79db5c793ce7dbe59e074b4dd1ad"}, @@ -1846,7 +1886,7 @@ version = "2.1.0" description = "sphinxcontrib-htmlhelp is a sphinx extension which renders HTML help files" optional = false python-versions = ">=3.9" -groups = ["main"] +groups = ["main", "dev"] files = [ {file = "sphinxcontrib_htmlhelp-2.1.0-py3-none-any.whl", hash = "sha256:166759820b47002d22914d64a075ce08f4c46818e17cfc9470a9786b759b19f8"}, {file = "sphinxcontrib_htmlhelp-2.1.0.tar.gz", hash = "sha256:c9e2916ace8aad64cc13a0d233ee22317f2b9025b9cf3295249fa985cc7082e9"}, @@ -1857,13 +1897,28 @@ lint = ["mypy", "ruff (==0.5.5)", "types-docutils"] standalone = ["Sphinx (>=5)"] test = ["html5lib", "pytest"] +[[package]] +name = "sphinxcontrib-jquery" +version = "4.1" +description = "Extension to include jQuery on newer Sphinx releases" +optional = false +python-versions = ">=2.7" +groups = ["dev"] +files = [ + {file = "sphinxcontrib-jquery-4.1.tar.gz", hash = "sha256:1620739f04e36a2c779f1a131a2dfd49b2fd07351bf1968ced074365933abc7a"}, + {file = "sphinxcontrib_jquery-4.1-py2.py3-none-any.whl", hash = "sha256:f936030d7d0147dd026a4f2b5a57343d233f1fc7b363f68b3d4f1cb0993878ae"}, +] + +[package.dependencies] +Sphinx = ">=1.8" + [[package]] name = "sphinxcontrib-jsmath" version = "1.0.1" description = "A sphinx extension which renders display math in HTML via JavaScript" optional = false python-versions = ">=3.5" -groups = ["main"] +groups = ["main", "dev"] files = [ {file = "sphinxcontrib-jsmath-1.0.1.tar.gz", hash = "sha256:a9925e4a4587247ed2191a22df5f6970656cb8ca2bd6284309578f2153e0c4b8"}, {file = "sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl", hash = "sha256:2ec2eaebfb78f3f2078e73666b1415417a116cc848b72e5172e596c871103178"}, @@ -1878,7 +1933,7 @@ version = "2.0.0" description = "sphinxcontrib-qthelp is a sphinx extension which outputs QtHelp documents" optional = false python-versions = ">=3.9" -groups = ["main"] +groups = ["main", "dev"] files = [ {file = "sphinxcontrib_qthelp-2.0.0-py3-none-any.whl", hash = "sha256:b18a828cdba941ccd6ee8445dbe72ffa3ef8cbe7505d8cd1fa0d42d3f2d5f3eb"}, {file = "sphinxcontrib_qthelp-2.0.0.tar.gz", hash = "sha256:4fe7d0ac8fc171045be623aba3e2a8f613f8682731f9153bb2e40ece16b9bbab"}, @@ -1895,7 +1950,7 @@ version = "2.0.0" description = "sphinxcontrib-serializinghtml is a sphinx extension which outputs \"serialized\" HTML files (json and pickle)" optional = false python-versions = ">=3.9" -groups = ["main"] +groups = ["main", "dev"] files = [ {file = "sphinxcontrib_serializinghtml-2.0.0-py3-none-any.whl", hash = "sha256:6e2cb0eef194e10c27ec0023bfeb25badbbb5868244cf5bc5bdc04e4464bf331"}, {file = "sphinxcontrib_serializinghtml-2.0.0.tar.gz", hash = "sha256:e9d912827f872c029017a53f0ef2180b327c3f7fd23c87229f7a8e8b70031d4d"}, @@ -2040,7 +2095,7 @@ version = "2.6.2" description = "HTTP library with thread-safe connection pooling, file post, and more." optional = false python-versions = ">=3.9" -groups = ["main"] +groups = ["main", "dev"] files = [ {file = "urllib3-2.6.2-py3-none-any.whl", hash = "sha256:ec21cddfe7724fc7cb4ba4bea7aa8e2ef36f607a4bab81aa6ce42a13dc3f03dd"}, {file = "urllib3-2.6.2.tar.gz", hash = "sha256:016f9c98bb7e98085cb2b4b17b87d2c702975664e4f060c6532e64d1c1a5e797"}, @@ -2058,7 +2113,7 @@ version = "3.23.0" description = "Backport of pathlib-compatible object wrapper for zip files" optional = false python-versions = ">=3.9" -groups = ["main"] +groups = ["main", "dev"] markers = "python_version < \"3.10\"" files = [ {file = "zipp-3.23.0-py3-none-any.whl", hash = "sha256:071652d6115ed432f5ce1d34c336c0adfd6a884660d1e9712a256d3d3bd4b14e"}, @@ -2076,4 +2131,4 @@ type = ["pytest-mypy"] [metadata] lock-version = "2.1" python-versions = ">=3.9.0,<3.13" -content-hash = "1a5ca86c4ad1c60a12c5455d10d5fb46d6c9cd80fafbde8471524204d9995ff5" +content-hash = "ca123f4186f481f1fae7d6f5e24098aa93c7d404cce6ee442e0cf83a573efb85" diff --git a/pyproject.toml b/pyproject.toml index 4fdaf825..41cf492d 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -23,6 +23,9 @@ pytest-cov = "*" pytest-mock = "*" pytest-xdist = "*" flake8 = "*" +sphinx-rtd-theme = "^3.0.2" +sphinx-autodoc-typehints = "^2.0" +sphinx-click = "^5.0" [tool.poetry.scripts] tdbpy = "terminusdb_client.scripts.scripts:tdbpy" From 70a7cb1075c4117e1715b6bf2a683bd16d77f4e6 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Philippe=20H=C3=B6ij?= Date: Wed, 7 Jan 2026 10:20:31 +0100 Subject: [PATCH 10/11] Fix documentation generation --- .github/insert_docs.py | 2 +- poetry.lock | 6 +++--- pyproject.toml | 3 ++- terminusdb_client/scripts/dev.py | 21 +++++++++++++++++++++ 4 files changed, 27 insertions(+), 5 deletions(-) diff --git a/.github/insert_docs.py b/.github/insert_docs.py index c7398526..413e1f37 100644 --- a/.github/insert_docs.py +++ b/.github/insert_docs.py @@ -54,4 +54,4 @@ def parameter_to_document(param): } ]} -print(json.dumps(application)) +print(json.dumps(application, indent=2)) diff --git a/poetry.lock b/poetry.lock index 2530b658..005ae774 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1057,7 +1057,7 @@ version = "1.9.0" description = "Sphinx extension to support docstrings in Numpy format" optional = false python-versions = ">=3.9" -groups = ["main"] +groups = ["main", "dev"] markers = "python_version < \"3.11\"" files = [ {file = "numpydoc-1.9.0-py3-none-any.whl", hash = "sha256:8a2983b2d62bfd0a8c470c7caa25e7e0c3d163875cdec12a8a1034020a9d1135"}, @@ -1074,7 +1074,7 @@ version = "1.10.0" description = "Sphinx extension to support docstrings in Numpy format" optional = false python-versions = ">=3.10" -groups = ["main"] +groups = ["main", "dev"] markers = "python_version >= \"3.11\"" files = [ {file = "numpydoc-1.10.0-py3-none-any.whl", hash = "sha256:3149da9874af890bcc2a82ef7aae5484e5aa81cb2778f08e3c307ba6d963721b"}, @@ -2131,4 +2131,4 @@ type = ["pytest-mypy"] [metadata] lock-version = "2.1" python-versions = ">=3.9.0,<3.13" -content-hash = "ca123f4186f481f1fae7d6f5e24098aa93c7d404cce6ee442e0cf83a573efb85" +content-hash = "7e20e9fb18c1d9b019113c272854a5b2a35d486b1ac47c45ace89d5413fa8324" diff --git a/pyproject.toml b/pyproject.toml index 41cf492d..f8d1d37b 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "terminusdb-client" -version = "11.1.0" +version = "12.0.3" description = "Python client for Terminus DB" authors = ["TerminusDB group"] license = "Apache Software License" @@ -26,6 +26,7 @@ flake8 = "*" sphinx-rtd-theme = "^3.0.2" sphinx-autodoc-typehints = "^2.0" sphinx-click = "^5.0" +numpydoc = "^1.5" [tool.poetry.scripts] tdbpy = "terminusdb_client.scripts.scripts:tdbpy" diff --git a/terminusdb_client/scripts/dev.py b/terminusdb_client/scripts/dev.py index 3aabf43a..5e9b3471 100644 --- a/terminusdb_client/scripts/dev.py +++ b/terminusdb_client/scripts/dev.py @@ -213,6 +213,24 @@ def docs(): os.chdir("..") +def docs_json(): + """Generate docs.json for documentation site.""" + print("Generating docs.json...") + script_path = Path(".github/insert_docs.py") + if not script_path.exists(): + print(f"Error: {script_path} not found") + sys.exit(1) + result = subprocess.run( + [sys.executable, str(script_path)], + capture_output=True, + text=True, + check=True, + ) + with open("docs.json", "w") as f: + f.write(result.stdout) + print("Generated docs.json successfully") + + def tox(): """Run tox for isolated testing.""" print("Running tox...") @@ -313,6 +331,7 @@ def main(): print(" test-integration - Run integration tests") print(" test-all - Run all tests (unit + integration)") print(" docs - Build documentation") + print(" docs-json - Generate docs.json for documentation site") print(" tox - Run tox for isolated testing") print(" clean - Clean build artifacts") print(" pr - Run all PR preparation checks") @@ -337,6 +356,7 @@ def main(): print(" test-integration - Run integration tests") print(" test-all - Run all tests (unit + integration)") print(" docs - Build documentation") + print(" docs-json - Generate docs.json for documentation site") print(" tox - Run tox for isolated testing") print(" clean - Clean build artifacts") print(" pr - Run all PR preparation checks") @@ -358,6 +378,7 @@ def main(): "test-integration": test_integration, "test-all": test_all, "docs": docs, + "docs-json": docs_json, "tox": tox, "clean": clean, "pr": pr, From f9ee6afcaccdd873b0b54b8d5cb4095b43334f3e Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Philippe=20H=C3=B6ij?= Date: Wed, 7 Jan 2026 10:22:34 +0100 Subject: [PATCH 11/11] Fix new tests --- .../test_prefix_management.py | 88 ++++++++++--------- 1 file changed, 45 insertions(+), 43 deletions(-) diff --git a/terminusdb_client/tests/integration_tests/test_prefix_management.py b/terminusdb_client/tests/integration_tests/test_prefix_management.py index 931d1790..c33f09ff 100644 --- a/terminusdb_client/tests/integration_tests/test_prefix_management.py +++ b/terminusdb_client/tests/integration_tests/test_prefix_management.py @@ -1,30 +1,32 @@ """Integration tests for prefix management operations.""" +import time + import pytest -from terminusdb_client.client import Client + +from terminusdb_client import Client @pytest.fixture -def client(): - """Create a test client connected to TerminusDB.""" - client = Client("http://127.0.0.1:6363") - client.connect(user="admin", key="root", team="admin") +def prefix_client(docker_url): + """Create a test client connected to TerminusDB using shared docker_url fixture.""" + client = Client(docker_url) + client.connect() return client @pytest.fixture -def test_db(client): +def test_db(prefix_client): """Create and cleanup a test database.""" - import time db_name = f"test_prefix_{int(time.time() * 1000)}" - client.create_database(db_name, label="Test Prefix DB", description="Database for testing prefix operations") - client.connect(db=db_name) + prefix_client.create_database(db_name, label="Test Prefix DB", description="Database for testing prefix operations") + prefix_client.connect(db=db_name) yield db_name # Cleanup try: - client.delete_database(db_name) + prefix_client.delete_database(db_name) except Exception: pass @@ -32,104 +34,104 @@ def test_db(client): class TestPrefixManagement: """Test suite for prefix management operations.""" - def test_add_prefix_success(self, client, test_db): + def test_add_prefix_success(self, prefix_client, test_db): """Test adding a new prefix successfully.""" - result = client.add_prefix("ex", "http://example.org/") + result = prefix_client.add_prefix("ex", "http://example.org/") assert result["api:status"] == "api:success" assert result["api:prefix_name"] == "ex" assert result["api:prefix_uri"] == "http://example.org/" - def test_add_prefix_duplicate(self, client, test_db): + def test_add_prefix_duplicate(self, prefix_client, test_db): """Test that adding duplicate prefix fails.""" - client.add_prefix("ex", "http://example.org/") + prefix_client.add_prefix("ex", "http://example.org/") with pytest.raises(Exception) as exc_info: - client.add_prefix("ex", "http://example.com/") + prefix_client.add_prefix("ex", "http://example.com/") # Should get 400 error with PrefixAlreadyExists assert exc_info.value.response.status_code == 400 - def test_add_prefix_invalid_iri(self, client, test_db): + def test_add_prefix_invalid_iri(self, prefix_client, test_db): """Test that invalid IRI is rejected.""" with pytest.raises(Exception) as exc_info: - client.add_prefix("ex", "not-a-valid-uri") + prefix_client.add_prefix("ex", "not-a-valid-uri") assert exc_info.value.response.status_code == 400 - def test_add_prefix_reserved(self, client, test_db): + def test_add_prefix_reserved(self, prefix_client, test_db): """Test that reserved prefix names are rejected.""" with pytest.raises(Exception) as exc_info: - client.add_prefix("@custom", "http://example.org/") + prefix_client.add_prefix("@custom", "http://example.org/") assert exc_info.value.response.status_code == 400 - def test_get_prefix_success(self, client, test_db): + def test_get_prefix_success(self, prefix_client, test_db): """Test retrieving an existing prefix.""" - client.add_prefix("ex", "http://example.org/") - uri = client.get_prefix("ex") + prefix_client.add_prefix("ex", "http://example.org/") + uri = prefix_client.get_prefix("ex") assert uri == "http://example.org/" - def test_get_prefix_not_found(self, client, test_db): + def test_get_prefix_not_found(self, prefix_client, test_db): """Test that getting non-existent prefix fails.""" with pytest.raises(Exception) as exc_info: - client.get_prefix("nonexistent") + prefix_client.get_prefix("nonexistent") assert exc_info.value.response.status_code == 404 - def test_update_prefix_success(self, client, test_db): + def test_update_prefix_success(self, prefix_client, test_db): """Test updating an existing prefix.""" - client.add_prefix("ex", "http://example.org/") - result = client.update_prefix("ex", "http://example.com/") + prefix_client.add_prefix("ex", "http://example.org/") + result = prefix_client.update_prefix("ex", "http://example.com/") assert result["api:status"] == "api:success" assert result["api:prefix_uri"] == "http://example.com/" # Verify the update - uri = client.get_prefix("ex") + uri = prefix_client.get_prefix("ex") assert uri == "http://example.com/" - def test_update_prefix_not_found(self, client, test_db): + def test_update_prefix_not_found(self, prefix_client, test_db): """Test that updating non-existent prefix fails.""" with pytest.raises(Exception) as exc_info: - client.update_prefix("nonexistent", "http://example.org/") + prefix_client.update_prefix("nonexistent", "http://example.org/") assert exc_info.value.response.status_code == 404 - def test_upsert_prefix_create(self, client, test_db): + def test_upsert_prefix_create(self, prefix_client, test_db): """Test upsert creates prefix if it doesn't exist.""" - result = client.upsert_prefix("ex", "http://example.org/") + result = prefix_client.upsert_prefix("ex", "http://example.org/") assert result["api:status"] == "api:success" assert result["api:prefix_uri"] == "http://example.org/" - def test_upsert_prefix_update(self, client, test_db): + def test_upsert_prefix_update(self, prefix_client, test_db): """Test upsert updates prefix if it already exists.""" - client.add_prefix("ex", "http://example.org/") - result = client.upsert_prefix("ex", "http://example.com/") + prefix_client.add_prefix("ex", "http://example.org/") + result = prefix_client.upsert_prefix("ex", "http://example.com/") assert result["api:status"] == "api:success" assert result["api:prefix_uri"] == "http://example.com/" - def test_delete_prefix_success(self, client, test_db): + def test_delete_prefix_success(self, prefix_client, test_db): """Test deleting an existing prefix.""" - client.add_prefix("ex", "http://example.org/") - result = client.delete_prefix("ex") + prefix_client.add_prefix("ex", "http://example.org/") + result = prefix_client.delete_prefix("ex") assert result["api:status"] == "api:success" # Verify deletion with pytest.raises(Exception) as exc_info: - client.get_prefix("ex") + prefix_client.get_prefix("ex") assert exc_info.value.response.status_code == 404 - def test_delete_prefix_not_found(self, client, test_db): + def test_delete_prefix_not_found(self, prefix_client, test_db): """Test that deleting non-existent prefix fails.""" with pytest.raises(Exception) as exc_info: - client.delete_prefix("nonexistent") + prefix_client.delete_prefix("nonexistent") assert exc_info.value.response.status_code == 404 - def test_delete_prefix_reserved(self, client, test_db): + def test_delete_prefix_reserved(self, prefix_client, test_db): """Test that deleting reserved prefix fails.""" with pytest.raises(Exception) as exc_info: - client.delete_prefix("@base") + prefix_client.delete_prefix("@base") assert exc_info.value.response.status_code == 400