Scbasset tutorial is not working due to connections issues in ucsc

[ori-kron-wis]

atac/scbasset.ipynb & atac/scbasset_batch.ipynb used to run on Berkeley workstations, and it is also working running it locally, but it is not working now from WIS workstations due to some connectivity issues with UCSC.

For now we can upload running it localy

File ~/.conda/envs/scvi/lib/python3.11/site-packages/mysql/connector/connection_cext.py:339, in CMySQLConnection._open_connection(self)
    337         self.converter.str_fallback = self._converter_str_fallback
    338 except MySQLInterfaceError as err:
--> 339     raise get_mysql_exception(
    340         msg=err.msg, errno=err.errno, sqlstate=err.sqlstate
    341     ) from err
    343 self._do_handshake()
    345 if (
    346     not self._ssl_disabled
    347     and hasattr(self._cmysql, "get_ssl_cipher")
   (...)
    352 
    353     # `get_ssl_cipher()` returns the name of the cipher being used.

DatabaseError: 2003 (HY000): Can't connect to MySQL server on 'genome-mysql.soe.ucsc.edu:3306' (110)

Versions:

1.2

[ori-kron-wis]

didn't work with other genome providers as well.

[ori-kron-wis]

see scverse/scvi-tools#3253