diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml new file mode 100644 index 000000000..8b48e9011 --- /dev/null +++ b/.github/workflows/ci.yml @@ -0,0 +1,63 @@ +name: CI + +on: + push: + branches: [master, styx-ci-cd, "chore/styx--github-actions", KAVR_12182025] + pull_request: + branches: [master, styx-ci-cd, KAVR_12182025] + workflow_dispatch: + +jobs: + lint-and-test: + name: Python ${{ matrix.python-version }} on ${{ matrix.os }} + runs-on: ${{ matrix.os }} + strategy: + fail-fast: false + matrix: + os: [ubuntu-latest] + python-version: ["3.10", "3.11", "3.12"] + + steps: + - name: Checkout code + uses: actions/checkout@v4 + with: + fetch-depth: 0 # Fetch all history for pre-commit to compare + + - name: Set up Python ${{ matrix.python-version }} + uses: actions/setup-python@v5 + with: + python-version: ${{ matrix.python-version }} + + - name: Install uv + uses: astral-sh/setup-uv@v4 + with: + enable-cache: true + cache-dependency-glob: "qualibration_graphs/superconducting/pyproject.toml" + + - name: Install dependencies + run: | + cd qualibration_graphs/superconducting + uv sync --group dev --prerelease=allow + + - name: Run pre-commit on changed files + run: | + cd qualibration_graphs/superconducting + if [ "${{ github.event_name }}" == "pull_request" ]; then + uv run pre-commit run --from-ref origin/${{ github.base_ref }} --to-ref HEAD + else + uv run pre-commit run --from-ref HEAD~1 --to-ref HEAD + fi + + - name: Run tests with pytest + run: | + cd qualibration_graphs/superconducting + uv run pytest --verbose --cov --cov-report=xml --cov-report=term + + - name: Upload coverage to Codecov + if: matrix.python-version == '3.12' && matrix.os == 'ubuntu-latest' + uses: codecov/codecov-action@v4 + with: + file: ./qualibration_graphs/superconducting/coverage.xml + flags: unittests + name: codecov-umbrella + fail_ci_if_error: false diff --git a/.gitignore b/.gitignore index 5e7d73e3a..6e0775000 100644 --- a/.gitignore +++ b/.gitignore @@ -1,3 +1,50 @@ -.idea -__pycache__ -.pytest_cache/ \ No newline at end of file +# Python +__pycache__/ +*.py[cod] +*$py.class +*.so +.Python + +# Virtual environments +.venv/ +venv/ +ENV/ +env/ + +# Testing +.pytest_cache/ +.coverage +htmlcov/ +.tox/ +.nox/ + +# IDEs +.vscode/ +.idea/ +*.swp +*.swo +*~ +.DS_Store + +# Distribution / packaging +build/ +dist/ +*.egg-info/ +.eggs/ + +# Jupyter Notebook +.ipynb_checkpoints + +# mypy +.mypy_cache/ +.dmypy.json +dmypy.json + +# Ruff +.ruff_cache/ + +# Pre-commit +.pre-commit-cache/ + +# Project specific +*.log diff --git a/qualibration_graphs/superconducting/.pre-commit-config.yaml b/qualibration_graphs/superconducting/.pre-commit-config.yaml new file mode 100644 index 000000000..ea1bf1c81 --- /dev/null +++ b/qualibration_graphs/superconducting/.pre-commit-config.yaml @@ -0,0 +1,43 @@ +repos: + # 1. Generic hygiene hooks + - repo: https://github.com/pre-commit/pre-commit-hooks + rev: v4.6.0 + hooks: + - id: trailing-whitespace + - id: end-of-file-fixer + - id: check-merge-conflict + - id: check-added-large-files + - id: check-yaml + - id: check-json + + # 2. Black: code formatting + - repo: https://github.com/psf/black + rev: 24.10.0 + hooks: + - id: black + language_version: python3 + + # 3. Pylint: linting + - repo: https://github.com/pycqa/pylint + rev: v3.3.1 + hooks: + - id: pylint + exclude: /tests/ + + # 4. Type checking – heavier, so run on push instead of every commit + - repo: https://github.com/pre-commit/mirrors-mypy + rev: v1.11.1 + hooks: + - id: mypy + stages: [pre-push] + additional_dependencies: + # Add stubs/internal deps here as needed + - types-setuptools + + # 5. Conventional commit messages (commitizen) + - repo: https://github.com/commitizen-tools/commitizen + rev: v3.29.0 + hooks: + - id: commitizen + stages: [commit-msg] + additional_dependencies: ["commitizen"] diff --git a/qualibration_graphs/superconducting/.pylintrc b/qualibration_graphs/superconducting/.pylintrc new file mode 100644 index 000000000..48a25efc5 --- /dev/null +++ b/qualibration_graphs/superconducting/.pylintrc @@ -0,0 +1,26 @@ + +[MESSAGES CONTROL] +# Enable ONLY: +# E = Errors +# R = Refactor suggestions +# C = Convention checks +# F = fatal +enable=E, R, F, C + +# Disable W (Warnings), and I (Information) +disable=W, I + + +[REPORTS] +# Cleaner output, no extra reports +reports=no + + +[MASTER] +# You can add folders to ignore if needed +ignore=venv + + +[FORMAT] +# Optional — set your preferred line length +max-line-length=120 diff --git a/qualibration_graphs/superconducting/CONTRIBUTING.md b/qualibration_graphs/superconducting/CONTRIBUTING.md new file mode 100644 index 000000000..65a10fd84 --- /dev/null +++ b/qualibration_graphs/superconducting/CONTRIBUTING.md @@ -0,0 +1,212 @@ +# Contributing Guide + +Welcome! This repository contains tools for building and analyzing calibration graphs for superconducting qubits. This guide explains how to set up your development environment, how we use pre-commit hooks, how tests are structured, and what we expect from contributions. + +--- + +## 1. Getting Started + +### 1.1. Clone the repository + +```bash +git clone git@github.com:qua-platform/superconducting_qualibrate.git +cd CS_installations/qualibration_graphs/superconducting +``` + +### 1.2. Create a virtual environment and install dependencies + +Using `uv` (recommended): + +```bash +# Install uv if you haven't already +curl -LsSf https://astral.sh/uv/install.sh | sh # Unix/macOS +# Or: pip install uv + +# Create venv and install dependencies in one command +uv sync --group dev --prerelease=allow +source .venv/bin/activate +``` + +Alternatively, with `venv`: + +```bash +python3 -m venv .venv +source .venv/bin/activate # Windows: .venv\Scripts\activate +pip install -e ".[dev]" +``` + +This installs: + +- Runtime deps (numpy, scipy, etc.) +- Dev tools: `pre-commit`, `black`, `pylint`, `mypy`, `pytest`, `pytest-cov`, `commitizen`, etc. + +### 1.3. Branch naming conventions + +When creating a new branch, follow these naming conventions: + +- **`feature/`** - New features or enhancements + - Example: `feature/rabi-calibration`, `feature/add-t2-ramsey` + +- **`bugfix/`** - Bug fixes + - Example: `bugfix/fix-t1-fitting`, `bugfix/nan-handling` + +- **`hotfix/`** - Urgent fixes for production issues + - Example: `hotfix/critical-pulse-timing` + +- **`chore/`** - Maintenance tasks, dependency updates, tooling + - Example: `chore/update-dependencies`, `chore/add-pre-commit` + +- **`refactor/`** - Code refactoring without changing functionality + - Example: `refactor/simplify-pulse-builder`, `refactor/calibration-pipeline` + +- **`experiment/`** - Experimental or exploratory work + - Example: `experiment/new-fitting-algorithm`, `experiment/alternative-approach` + +- **`release/`** - Release preparation branches + - Example: `release/v1.0.0`, `release/v1.1.0` + +Use lowercase, hyphen-separated descriptions. Keep branch names concise but descriptive. + +--- + +## 2. Pre-commit Hooks + +We use [pre-commit](https://pre-commit.com) to automatically run fast checks before each commit. This ensures consistent style and catches many issues early. + +### 2.1. Install the hooks + +Run once after cloning: + +```bash +pre-commit install +pre-commit install --hook-type commit-msg +``` + +This sets up two things: + +- A **pre-commit** hook that runs on staged files before every commit. +- A **commit-msg** hook (via Commitizen) that validates your commit messages. + +### 2.2. What runs in pre-commit? + +On each commit, the following checks run (on changed files): + +- **Formatting and linting** + - **Black** (`black`) for consistent Python formatting (120 char line length). + - **Pylint** (`pylint`) for code quality checks, following the `.pylintrc` configuration. + +- **Generic hygiene** + - Strip trailing whitespace. + - Ensure files end with a newline. + - Prevent committing merge conflict markers. + - Check YAML/JSON formatting. + - Warn on accidental large binary files. + +On each **push**, an additional hook runs: + +- **mypy**: static type checks on the codebase. + +### 2.3. Running pre-commit manually + +You can run pre-commit hooks on your staged files at any time: + +```bash +pre-commit run +``` + +Or, if you want to check all files in the repository (useful before opening a PR): + +```bash +pre-commit run --all-files +``` + +Fixes are usually applied automatically (e.g. for formatting). If a hook fails: + +1. Read the error message. +2. Apply any suggested code changes. +3. Re-stage your files (`git add ...`). +4. Re-run the command or attempt the commit again. + +--- + +## 3. Commit Messages (Conventional Commits) + +We use [Conventional Commits](https://www.conventionalcommits.org/) enforced by Commitizen. The format is: + +```text +[:scope]: + +[optional body] + +[optional footer(s)] +``` + +Common types: + +- `feat`: a new feature +- `fix`: a bug fix +- `refactor`: code change that neither fixes a bug nor adds a feature +- `docs`: documentation only changes +- `test`: adding or updating tests only +- `chore`: tooling, build, or other non-product code changes + +Examples: + +- `feat: add rabi calibration pipeline` +- `fix: handle NaNs in t1 analysis` +- `refactor: simplify pulse sequence builder` + +If your commit message doesn’t follow the convention, the `commit-msg` hook will fail and show an error. + +You can also use Commitizen’s CLI to help craft messages and bump versions: + +```bash +cz commit +cz bump +``` + +(See `.cz.toml` or `[tool.commitizen]` in `pyproject.toml` for configuration.) + +--- + +## 4. Tests + +We use `pytest` and organize tests into tiers that reflect how the calibration and control stack is validated, from pure Python logic up to hardware-in-the-loop checks. + +--- + +## 5. Pull Requests + +Before opening a PR: + +1. Ensure your branch is up-to-date with the target branch (`main` or `develop`). +2. Stage your changes and run: + ```bash + git add . + pre-commit run + pytest + ``` + Note: Pre-commit will only check your staged changes. If you want to check all files, use `pre-commit run --all-files`. +3. Add or update tests for your changes following the tiered test structure above. +4. Ensure your commit messages follow Conventional Commits. + +When you open the PR: + +- CI will run linting/formatting checks and the configured test tiers. +- At least one reviewer must approve before merging. +- For changes that affect calibration logic, signals, or hardware interaction, please: + - Describe the impact on calibration workflows in the PR description. + - Indicate which test tiers you updated or verified. + - Link any related GitHub Issues or design docs. + +--- + +## 6. Questions + +If you’re unsure about: + +- Which test tier is appropriate for your change, +- How to structure calibration or signal validation tests, +- How to interpret pre-commit or CI errors, + +please ask in the development channel or tag a maintainer in your PR. diff --git a/qualibration_graphs/superconducting/pyproject.toml b/qualibration_graphs/superconducting/pyproject.toml index 190d69efa..bcdc0372e 100644 --- a/qualibration_graphs/superconducting/pyproject.toml +++ b/qualibration_graphs/superconducting/pyproject.toml @@ -4,7 +4,7 @@ version = "0.1.0" description = "QM Superconducting Calibration Graphs" readme = "../README.md" license = { text = "BSD-3-Clause" } -requires-python = ">=3.9,<3.13" +requires-python = ">=3.10,<3.13" classifiers = [ "Programming Language :: Python :: 3", "License :: OSI Approved :: BSD License", @@ -30,12 +30,51 @@ dependencies = [ [tool.black] line-length = 120 +[tool.pytest.ini_options] +testpaths = ["tests"] +python_files = "test_*.py" +python_classes = "Test*" +python_functions = "test_*" +addopts = [ + "--verbose", + "--cov=calibrations", + "--cov=quam_config", + "--cov=calibration_utils", + "--cov-report=term-missing", + "--cov-report=html", +] + +[tool.mypy] +python_version = "3.10" +warn_return_any = true +warn_unused_configs = true +disallow_untyped_defs = false +ignore_missing_imports = true + +[tool.commitizen] +name = "cz_conventional_commits" +version = "0.1.0" +tag_format = "v$version" +update_changelog_on_bump = true +version_files = [ + "pyproject.toml:version" +] + [build-system] requires = ["hatchling"] build-backend = "hatchling.build" [dependency-groups] -dev = ["ipykernel>=7.0.0a1", "pytest>=8.3.5"] +dev = [ + "ipykernel>=7.0.0a1", + "pytest>=8.3.5", + "pytest-cov>=6.0.0", + "black>=24.10.0", + "pylint>=3.3.1", + "mypy>=1.11.1", + "pre-commit>=4.0.0", + "commitizen>=3.29.0", +] [tool.hatch.build.targets.wheel] packages = ["calibrations", "quam_config", "calibration_utils"] diff --git a/qualibration_graphs/superconducting/tests/__init__.py b/qualibration_graphs/superconducting/tests/__init__.py new file mode 100644 index 000000000..ad9686191 --- /dev/null +++ b/qualibration_graphs/superconducting/tests/__init__.py @@ -0,0 +1 @@ +"""Tests for superconducting-calibrations package.""" diff --git a/qualibration_graphs/superconducting/tests/test_imports.py b/qualibration_graphs/superconducting/tests/test_imports.py new file mode 100644 index 000000000..434d0987c --- /dev/null +++ b/qualibration_graphs/superconducting/tests/test_imports.py @@ -0,0 +1,53 @@ +"""Test that main packages can be imported.""" + +import pytest + + +def test_import_calibrations(): + """Test that calibrations package can be imported.""" + try: + import calibrations + + assert calibrations is not None + except ImportError as e: + pytest.skip(f"calibrations package not available: {e}") + + +def test_import_quam_config(): + """Test that quam_config package can be imported.""" + try: + import quam_config + + assert quam_config is not None + except ImportError as e: + pytest.skip(f"quam_config package not available: {e}") + + +def test_import_calibration_utils(): + """Test that calibration_utils package can be imported.""" + try: + import calibration_utils + + assert calibration_utils is not None + except ImportError as e: + pytest.skip(f"calibration_utils package not available: {e}") + + +def test_import_dependencies(): + """Test that key dependencies can be imported.""" + dependencies = [ + "quam", + "qualang_tools", + "qm", + "numpy", + "scipy", + "xarray", + "plotly", + "lmfit", + ] + + for dep in dependencies: + try: + __import__(dep) + except ImportError as e: + pytest.skip(f"Dependency {dep} not available: {e}") diff --git a/qualibration_graphs/superconducting/tests/test_sanity.py b/qualibration_graphs/superconducting/tests/test_sanity.py new file mode 100644 index 000000000..a9fb80dd8 --- /dev/null +++ b/qualibration_graphs/superconducting/tests/test_sanity.py @@ 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