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Add tests for workflow frameworks #372

Add tests for workflow frameworks

Add tests for workflow frameworks #372

Triggered via pull request January 8, 2026 20:27
@jan-janssenjan-janssen
synchronize #155
test
Status Failure
Total duration 27m 14s
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pipeline.yml

on: pull_request
Matrix: unittest_matrix
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6 errors and 15 warnings
unittest_matrix (ubuntu-latest, 3.11)
Process completed with exit code 1.
unittest_matrix (ubuntu-latest, 3.12)
The strategy configuration was canceled because "unittest_matrix.ubuntu-latest_3_11" failed
unittest_matrix (ubuntu-latest, 3.12)
The operation was canceled.
unittest_matrix (macos-latest, 3.12)
The strategy configuration was canceled because "unittest_matrix.ubuntu-latest_3_11" failed
unittest_matrix (macos-latest, 3.12)
The operation was canceled.
coverage
Process completed with exit code 1.
documentation
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
unittest_matrix (ubuntu-latest, 3.11)
warning libmamba [galaxy-util-25.1.dev0-pyhd8ed1ab_0] The following files were already present in the environment: - lib/python3.11/site-packages/galaxy/__init__.py - lib/python3.11/site-packages/galaxy/py.typed
unittest_matrix (ubuntu-latest, 3.11)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
unittest_matrix (ubuntu-latest, 3.12)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
pip_check
warning libmamba [galaxy-util-25.1.dev0-pyhd8ed1ab_0] The following files were already present in the environment: - lib/python3.12/site-packages/galaxy/__init__.py - lib/python3.12/site-packages/galaxy/py.typed
pip_check
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
unittest_matrix (macos-latest, 3.12)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
coverage
warning libmamba [galaxy-util-25.1.dev0-pyhd8ed1ab_0] The following files were already present in the environment: - lib/python3.12/site-packages/galaxy/__init__.py - lib/python3.12/site-packages/galaxy/py.typed
coverage
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
arithmetic
warning libmamba [galaxy-util-25.1.dev0-pyhd8ed1ab_0] The following files were already present in the environment: - lib/python3.12/site-packages/galaxy/__init__.py - lib/python3.12/site-packages/galaxy/py.typed
arithmetic
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
nfdi4ing
warning libmamba [galaxy-util-25.1.dev0-pyhd8ed1ab_0] The following files were already present in the environment: - lib/python3.12/site-packages/galaxy/__init__.py - lib/python3.12/site-packages/galaxy/py.typed
nfdi4ing
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
quantumespresso
warning libmamba [galaxy-util-25.1.dev0-pyhd8ed1ab_0] The following files were already present in the environment: - lib/python3.12/site-packages/galaxy/__init__.py - lib/python3.12/site-packages/galaxy/py.typed
quantumespresso
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.