From 52dfe5cf43253f6a852ca775134895fd8edbb059 Mon Sep 17 00:00:00 2001
From: Tobias Raabe <raabe@posteo.de>
Date: Wed, 31 Dec 2025 11:52:08 +0100
Subject: [PATCH 1/5] chore: update install docs and typing command

---
 README.md | 19 +++++++++++++++----
 justfile  |  2 +-
 2 files changed, 16 insertions(+), 5 deletions(-)

diff --git a/README.md b/README.md
index 0d831be..51f32ae 100644
--- a/README.md
+++ b/README.md
@@ -20,11 +20,11 @@ pytask-r is available on [PyPI](https://pypi.org/project/pytask-r) and
 [Anaconda.org](https://anaconda.org/conda-forge/pytask-r). Install it with
 
 ```console
-$ pip install pytask-r
+$ uv add pytask-r
 
 # or
 
-$ conda install -c conda-forge pytask-r
+$ pixi add pytask-r
 ```
 
 You also need to have R installed and `Rscript` on your command line. Test it by typing
@@ -34,14 +34,16 @@ the following on the command line
 Rscript --help
 ```
 
-If an error is shown instead of a help page, you can install R with `conda`.
+If an error is shown instead of a help page, you can install R with `pixi`.
 
 ```console
-conda install -c conda-forge r-base
+pixi add r-base
 ```
 
 Or install install R from the official [R Project](https://www.r-project.org/).
 
+For serializing task data, install either `r-jsonlite` for JSON or `r-yaml` for YAML.
+
 ## Usage
 
 To create a task that runs an R script, define a task function with the `@mark.r`
@@ -246,3 +248,12 @@ r_options = ["--vanilla"]
 ## Changes
 
 Consult the [release notes](CHANGES.md) to find out about what is new.
+
+## Developer
+
+To run the tests, `r-base` and its dependencies need to be installed. The recommended
+command is
+
+```console
+pixi global install r-base --with r-jsonlite --with r-yaml
+```
diff --git a/justfile b/justfile
index 46b6b8d..58668b7 100644
--- a/justfile
+++ b/justfile
@@ -12,7 +12,7 @@ test-cov *FLAGS:
 
 # Run type checking
 typing:
-    uv run --group typing --group test ty check src/ tests/
+    uv run --group typing --group test --isolated ty check src/ tests/
 
 # Run linting
 lint:

From 928a401cb42ad0f2e62283970e1d1f53410fcb97 Mon Sep 17 00:00:00 2001
From: Tobias Raabe <raabe@posteo.de>
Date: Wed, 31 Dec 2025 12:49:27 +0100
Subject: [PATCH 2/5] chore: bump ty minimum to 0.0.8

---
 pyproject.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index c7089ae..7285155 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -36,7 +36,7 @@ pytask_r = "pytask_r.plugin"
 
 [dependency-groups]
 test = ["pytask-parallel", "pytest", "pytest-cov", "pytest-xdist", "pyyaml"]
-typing = ["ty>=0.0.7"]
+typing = ["ty>=0.0.8"]
 
 [build-system]
 requires = ["hatchling", "hatch-vcs"]

From 122de8f1e8a02846e35c621b16c5e521a8ae3e4c Mon Sep 17 00:00:00 2001
From: Tobias Raabe <raabe@posteo.de>
Date: Wed, 31 Dec 2025 12:54:26 +0100
Subject: [PATCH 3/5] chore: add weekly dependabot for uv

---
 .github/dependabot.yml | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/.github/dependabot.yml b/.github/dependabot.yml
index 718572b..6483b1d 100644
--- a/.github/dependabot.yml
+++ b/.github/dependabot.yml
@@ -1,7 +1,6 @@
 version: 2
-
 updates:
-  - package-ecosystem: "github-actions"
+  - package-ecosystem: "uv"
     directory: "/"
     schedule:
       interval: "weekly"

From 6418b625769b23ae677ad206ca9cdaa2f04623fe Mon Sep 17 00:00:00 2001
From: Tobias Raabe <raabe@posteo.de>
Date: Wed, 31 Dec 2025 13:06:56 +0100
Subject: [PATCH 4/5] chore: add github-actions dependabot updates

---
 .github/dependabot.yml | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/.github/dependabot.yml b/.github/dependabot.yml
index 6483b1d..c766b7e 100644
--- a/.github/dependabot.yml
+++ b/.github/dependabot.yml
@@ -1,5 +1,9 @@
 version: 2
 updates:
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    schedule:
+      interval: "weekly"
   - package-ecosystem: "uv"
     directory: "/"
     schedule:

From ffbd4e60fe7d3a8a009aa97624271bc2a6e6e698 Mon Sep 17 00:00:00 2001
From: Tobias Raabe <raabe@posteo.de>
Date: Wed, 31 Dec 2025 15:42:13 +0100
Subject: [PATCH 5/5] chore: group github-actions dependabot updates

---
 .github/dependabot.yml | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/.github/dependabot.yml b/.github/dependabot.yml
index c766b7e..be4ca53 100644
--- a/.github/dependabot.yml
+++ b/.github/dependabot.yml
@@ -1,9 +1,14 @@
 version: 2
+
 updates:
   - package-ecosystem: "github-actions"
     directory: "/"
     schedule:
       interval: "weekly"
+    groups:
+      github-actions:
+        patterns:
+          - "*"
   - package-ecosystem: "uv"
     directory: "/"
     schedule: